Import of pkgsrc-2016Q3

2016-10-14 07:49:11 +02:00
parent 9d819b6d54
commit 1242aa1e36
35952 changed files with 949749 additions and 377083 deletions
--- a/math/Makefile
+++ b/math/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.306 2015/08/25 05:05:39 richard Exp $
+# $NetBSD: Makefile,v 1.334 2016/09/20 10:34:34 wiz Exp $

 COMMENT=	Mathematics

@@ -6,8 +6,10 @@ SUBDIR+=	R
 SUBDIR+=	R-CGIwithR
 SUBDIR+=	R-DAAG
 SUBDIR+=	R-DBI
+SUBDIR+=	R-FNN
 SUBDIR+=	R-GRASS
 SUBDIR+=	R-ISwR
+SUBDIR+=	R-MatrixModels
 SUBDIR+=	R-PHYLOGR
 SUBDIR+=	R-R2HTML
 SUBDIR+=	R-RArcInfo
@@ -15,6 +17,8 @@ SUBDIR+=	R-RColorBrewer
 SUBDIR+=	R-RPostgreSQL
 SUBDIR+=	R-RandomFields
 SUBDIR+=	R-Rcmdr
+SUBDIR+=	R-RcppEigen
+SUBDIR+=	R-SparseM
 SUBDIR+=	R-XML
 SUBDIR+=	R-abind
 SUBDIR+=	R-akima
@@ -39,10 +43,13 @@ SUBDIR+=	R-intervals
 SUBDIR+=	R-lmm
 SUBDIR+=	R-mapproj
 SUBDIR+=	R-maps
+SUBDIR+=	R-minqa
 SUBDIR+=	R-mvtnorm
 SUBDIR+=	R-ncdf
+SUBDIR+=	R-nloptr
 SUBDIR+=	R-pixmap
 SUBDIR+=	R-plyr
+SUBDIR+=	R-quantreg
 SUBDIR+=	R-randomForest
 SUBDIR+=	R-sgeostat
 SUBDIR+=	R-shapefiles
@@ -65,11 +72,13 @@ SUBDIR+=	arpack
 SUBDIR+=	bc
 SUBDIR+=	blas
 SUBDIR+=	blitz++
+SUBDIR+=	boolstuff
 SUBDIR+=	calc
 SUBDIR+=	calcoo
 SUBDIR+=	cantor
 SUBDIR+=	capc-calc
 SUBDIR+=	cgal
+SUBDIR+=	classias
 SUBDIR+=	clisp-pari
 SUBDIR+=	cln
 SUBDIR+=	cloog
@@ -89,6 +98,7 @@ SUBDIR+=	eukleides10
 SUBDIR+=	euler
 SUBDIR+=	extcalc
 SUBDIR+=	fftpack
+SUBDIR+=	ffts
 SUBDIR+=	fftw
 SUBDIR+=	fftw2
 SUBDIR+=	fftwf
@@ -119,6 +129,7 @@ SUBDIR+=	gtklife
 SUBDIR+=	harminv
 SUBDIR+=	heirloom-factor
 SUBDIR+=	heirloom-units
+SUBDIR+=	herisvm
 SUBDIR+=	hs-distributive
 SUBDIR+=	hs-mwc-random
 SUBDIR+=	hs-nats
@@ -133,6 +144,7 @@ SUBDIR+=	kseg
 SUBDIR+=	lapack
 SUBDIR+=	libffm
 SUBDIR+=	libint
+SUBDIR+=	libixion
 SUBDIR+=	liblbfgs
 SUBDIR+=	liblinear
 SUBDIR+=	libmatheval
@@ -156,7 +168,9 @@ SUBDIR+=	mtl
 SUBDIR+=	muparser
 SUBDIR+=	newmat
 SUBDIR+=	nickle
+SUBDIR+=	nlopt
 SUBDIR+=	ntl
+SUBDIR+=	ocaml-zarith
 SUBDIR+=	octave
 SUBDIR+=	odepack
 SUBDIR+=	openaxiom
@@ -172,6 +186,7 @@ SUBDIR+=	p5-Math-Base36
 SUBDIR+=	p5-Math-Base85
 SUBDIR+=	p5-Math-BaseCnv
 SUBDIR+=	p5-Math-Bezier
+SUBDIR+=	p5-Math-BigInt
 SUBDIR+=	p5-Math-BigInt-GMP
 SUBDIR+=	p5-Math-BigInt-Pari
 SUBDIR+=	p5-Math-BigInteger
@@ -211,10 +226,13 @@ SUBDIR+=	p5-Statistics-TTest
 SUBDIR+=	p5-Test-Number-Delta
 SUBDIR+=	pari
 SUBDIR+=	pari-galdata
+SUBDIR+=	pari23
+SUBDIR+=	pcg
 SUBDIR+=	pear-Math_BigInteger
 SUBDIR+=	pear-Numbers_Roman
 SUBDIR+=	pear-Numbers_Words
 SUBDIR+=	php-bcmath
+SUBDIR+=	php-stats
 SUBDIR+=	ppl
 SUBDIR+=	prng
 SUBDIR+=	pspp
@@ -222,25 +240,31 @@ SUBDIR+=	py-Numeric
 SUBDIR+=	py-Scientific
 SUBDIR+=	py-Scientific-doc
 SUBDIR+=	py-almost
+SUBDIR+=	py-autograd
 SUBDIR+=	py-cdecimal
 SUBDIR+=	py-ephem
 SUBDIR+=	py-ephem3
+SUBDIR+=	py-fftw
 SUBDIR+=	py-fpconst
 SUBDIR+=	py-gmpy
 SUBDIR+=	py-infinity
 SUBDIR+=	py-intervals
+SUBDIR+=	py-lmfit
 SUBDIR+=	py-mpmath
 SUBDIR+=	py-munkres
 SUBDIR+=	py-networkx
+SUBDIR+=	py-noise
 SUBDIR+=	py-numarray
 SUBDIR+=	py-numexpr
 SUBDIR+=	py-numpy
 SUBDIR+=	py-pandas
+SUBDIR+=	py-patsy
 SUBDIR+=	py-pytables
 SUBDIR+=	py-roman
 SUBDIR+=	py-rpy
 SUBDIR+=	py-scipy
 SUBDIR+=	py-simpleeval
+SUBDIR+=	py-statsmodels
 SUBDIR+=	py-sympy
 SUBDIR+=	qalculate
 SUBDIR+=	qalculate-bases
@@ -251,8 +275,10 @@ SUBDIR+=	qalculate-units
 SUBDIR+=	qhull
 SUBDIR+=	quadpack
 SUBDIR+=	randlib
+SUBDIR+=	ranger
 SUBDIR+=	ruby-gsl
 SUBDIR+=	ruby-narray
+SUBDIR+=	ruby-roo
 SUBDIR+=	ruby-spreadsheet
 SUBDIR+=	sc
 SUBDIR+=	scilab
@@ -261,6 +287,7 @@ SUBDIR+=	snns
 SUBDIR+=	speedcrunch
 SUBDIR+=	statist
 SUBDIR+=	superlu
+SUBDIR+=	svmlin
 SUBDIR+=	tasp-vsipl
 SUBDIR+=	teapot
 SUBDIR+=	tex-apnum
@@ -274,6 +301,7 @@ SUBDIR+=	tochnog
 SUBDIR+=	udunits
 SUBDIR+=	units
 SUBDIR+=	vista
+SUBDIR+=	vowpal_wabbit
 SUBDIR+=	wxmaxima
 SUBDIR+=	xeukleides10
 SUBDIR+=	xfractint
@@ -285,5 +313,6 @@ SUBDIR+=	xmgr
 SUBDIR+=	xylib
 SUBDIR+=	yacas
 SUBDIR+=	yorick
+SUBDIR+=	z3

 .include "../mk/misc/category.mk"
--- a/math/R-CGIwithR/MESSAGE
+++ b/math/R-CGIwithR/MESSAGE
@@ -1,4 +1,8 @@
+===========================================================================
+$NetBSD: MESSAGE,v 1.2 2015/12/29 04:04:28 dholland Exp $
+
 After the installation of this R package is complete
 copy the files R.cgi and .Rprofile in
    ${PREFIX}/lib/R/library/CGIwithR/cgi-bin/
 to the cgi-bin area of your Web server.
+===========================================================================
--- a/math/R-CGIwithR/Makefile
+++ b/math/R-CGIwithR/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.14 2014/02/12 23:18:10 tron Exp $
+# $NetBSD: Makefile,v 1.15 2016/03/05 11:28:52 jperkin Exp $
 #

-PKGREVISION=		9
+PKGREVISION=		10
 CATEGORIES=		math
 MASTER_SITES=		${MASTER_SITE_R_CRAN:=contrib/}

--- a/math/R-CGIwithR/distinfo
+++ b/math/R-CGIwithR/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2011/05/10 18:55:55 alnsn Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:26 agc Exp $

 SHA1 (R/CGIwithR_0.73-0.tar.gz) = 70def800a7894a300b59c96df0169849fdcc07c6
 RMD160 (R/CGIwithR_0.73-0.tar.gz) = dbd075191e2bb31e81e609baccc4f9e557db1a0f
+SHA512 (R/CGIwithR_0.73-0.tar.gz) = 85fcccbcdc34cce2685610677a0b1ab1ffc8ef9a6a5a98d36521c0653130283c78360142943196fcdc815d90d722ac8f05708324f6558a05532a93dd9833626a
 Size (R/CGIwithR_0.73-0.tar.gz) = 191630 bytes
--- a/math/R-DAAG/distinfo
+++ b/math/R-DAAG/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.6 2014/08/26 15:48:39 brook Exp $
+$NetBSD: distinfo,v 1.7 2015/11/03 23:33:26 agc Exp $

 SHA1 (R/DAAG_1.20.tar.gz) = 146818a5fc61a5fa42358bc7056343bbf3b0f470
 RMD160 (R/DAAG_1.20.tar.gz) = eb2952a7996940eba58ea4ba0e247b3d4ce5d94d
+SHA512 (R/DAAG_1.20.tar.gz) = d1df52e7f07fb98bf303daa56fc4e33ab136d7eea3e9be90d8ebe2defa429d50095ad8fc9b25f96ce48faf02ce31ab5d2c51aa5ea2b9b50000774e98a9e1851f
 Size (R/DAAG_1.20.tar.gz) = 1416985 bytes
--- a/math/R-DBI/distinfo
+++ b/math/R-DBI/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2015/08/07 01:41:38 wen Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:26 agc Exp $

 SHA1 (R/DBI_0.3.1.tar.gz) = 380bbcda870269d3850bcbb01ef25aba92888cad
 RMD160 (R/DBI_0.3.1.tar.gz) = 8f2016b8eb5222efbf7cb49e690c9a31c6b79525
+SHA512 (R/DBI_0.3.1.tar.gz) = 424eb52ba1ed47e109b72e6e490f7658f81b980adffbfefbd0a5e7f4d25aaa27c2d81d72d94bbedb0e20962f12ce363545d4e50290c7a91c412c83b88f53ea60
 Size (R/DBI_0.3.1.tar.gz) = 30106 bytes
--- a/math/R-FNN/DESCR
+++ b/math/R-FNN/DESCR
@@ -0,0 +1,3 @@
+Cover-tree and kd-tree fast k-nearest neighbor search algorithms
+and related applications including KNN classification, regression
+and information measures are implemented.
--- a/math/R-FNN/Makefile
+++ b/math/R-FNN/Makefile
@@ -0,0 +1,17 @@
+# $NetBSD: Makefile,v 1.1 2016/02/25 01:09:37 wen Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/FNN/
+COMMENT=	Fast Nearest Neighbor Search Algorithms and Applications
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	FNN
+R_PKGVER=	1.1
+
+USE_LANGUAGES+=	c++
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-FNN/distinfo
+++ b/math/R-FNN/distinfo
@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.1 2016/02/25 01:09:37 wen Exp $
+
+SHA1 (R/FNN_1.1.tar.gz) = ac5c9025e3eb3b6323c7e785191b1e087801442d
+RMD160 (R/FNN_1.1.tar.gz) = 54eeb85f2b1ce0e45fc437050af3e10f4e120cf8
+SHA512 (R/FNN_1.1.tar.gz) = 8fefe3f8af38702223fcfee4947fc002d14b15de1896a540b131a2a0bf2a542ea9d0efedbf19d406ff3f9cc3dc79d7ff8ce78c940ed5f8597647c5a96466966f
+Size (R/FNN_1.1.tar.gz) = 77283 bytes
+SHA1 (patch-src_Makevars) = ea930ea74f2571f137b36893aca7cb3d9491f0c0
--- a/math/R-FNN/patches/patch-src_Makevars
+++ b/math/R-FNN/patches/patch-src_Makevars
@@ -0,0 +1,13 @@
+$NetBSD: patch-src_Makevars,v 1.1 2016/02/25 01:09:37 wen Exp $
+
+--- src/Makevars.orig	2016-02-25 08:53:40.000000000 +0000
+++ src/Makevars
+@@ -4,7 +4,7 @@ PKG_CPPFLAGS = -Iinclude -DUSING_R -DUSI
+ PKG_LIBS =
+ 
+ #clean after building
+-all: $(SHLIB) clean
+all: $(SHLIB)
+ 
+ clean: $(SHLIB)
+ 	$(RM) *.o core
--- a/math/R-GRASS/distinfo
+++ b/math/R-GRASS/distinfo
@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.5 2009/12/11 19:14:36 adam Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:26 agc Exp $

 SHA1 (R/GRASS_0.3-8.tar.gz) = ceed1ef2ee3ad94c04f98326955256ee536619e6
 RMD160 (R/GRASS_0.3-8.tar.gz) = ad4d5a8002ee0a6ee16241eeb47357ca3d59de85
+SHA512 (R/GRASS_0.3-8.tar.gz) = cd7c17d518d9bedfc205516adc2eb7f4e35f9b6085dcd02dffa284572e2bcfcd1d8f0943cc051d1f70cc07af96cc4a73cb494273758b37dd0377a66ef71cbd40
 Size (R/GRASS_0.3-8.tar.gz) = 230510 bytes
 SHA1 (patch-aa) = 6275c08691efd46a82484d0f79fc4c90fb1466b4
 SHA1 (patch-ab) = 353cd59744ae56fdf6cafaaea951cd4d8f487d98
--- a/math/R-ISwR/Makefile
+++ b/math/R-ISwR/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2012/04/15 14:45:35 brook Exp $
+# $NetBSD: Makefile,v 1.8 2016/04/09 11:23:40 wen Exp $

 CATEGORIES=	databases math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Data sets and scripts for 'Introductory Statistics with R'
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	ISwR
-R_PKGVER=	2.0-6
+R_PKGVER=	2.0-7

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-ISwR/distinfo
+++ b/math/R-ISwR/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2012/04/15 14:45:35 brook Exp $
+$NetBSD: distinfo,v 1.7 2016/04/09 11:23:40 wen Exp $

-SHA1 (R/ISwR_2.0-6.tar.gz) = e436387186a80421980136038b72dfa0b7a17150
-RMD160 (R/ISwR_2.0-6.tar.gz) = 67d91a7675c27bf86b299ee428412c1fc1f69cec
-Size (R/ISwR_2.0-6.tar.gz) = 162710 bytes
+SHA1 (R/ISwR_2.0-7.tar.gz) = e0184f00e49bb4c91c134283764557fa65bb7d44
+RMD160 (R/ISwR_2.0-7.tar.gz) = f3afd17c7827fb6756760d01525ac7072a200339
+SHA512 (R/ISwR_2.0-7.tar.gz) = 606753e6f3263749436c509f645de245c0b20a67b99bb5c210283a48444b55bfc293a9501f78357c9ae4c96e6523b2858484d81308c7ad3a19d72807e00d3009
+Size (R/ISwR_2.0-7.tar.gz) = 163964 bytes
--- a/math/R-MatrixModels/DESCR
+++ b/math/R-MatrixModels/DESCR
@@ -0,0 +1,2 @@
+Modelling with sparse and dense 'Matrix' matrices, using modular
+prediction and response module classes.
--- a/math/R-MatrixModels/Makefile
+++ b/math/R-MatrixModels/Makefile
@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.1 2016/01/01 05:38:54 wen Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/MatrixModels/
+COMMENT=	Modelling with Sparse And Dense Matrices
+LICENSE=	gnu-gpl-v2 OR gnu-gpl-v3
+
+R_PKGNAME=	MatrixModels
+R_PKGVER=	0.4-1
+
+USE_LANGUAGES=	# none
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-MatrixModels/distinfo
+++ b/math/R-MatrixModels/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2016/01/01 05:38:54 wen Exp $
+
+SHA1 (R/MatrixModels_0.4-1.tar.gz) = a5c3ba4361903ef19eaf4cbb31a14bf14ddb60ad
+RMD160 (R/MatrixModels_0.4-1.tar.gz) = 66e31feaa7d783615bf96cea5ea457b9da97ba16
+SHA512 (R/MatrixModels_0.4-1.tar.gz) = 058c229c7a56e06c3b38ed1e93ef4ca02ac73f91a4c7536a892a8d2579c5ad75ad4b726d1b8efd5f0389e6584e6abbd4c8715d190d573c1f1aa13f9efd7fc665
+Size (R/MatrixModels_0.4-1.tar.gz) = 23065 bytes
--- a/math/R-PHYLOGR/Makefile
+++ b/math/R-PHYLOGR/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2013/12/07 19:32:48 dholland Exp $
+# $NetBSD: Makefile,v 1.7 2016/01/09 14:12:48 wen Exp $
 #

 CATEGORIES=		databases math
@@ -10,7 +10,7 @@ COMMENT=		Manipulation of phylogenetically simulated data sets using GLS
 LICENSE=		gnu-gpl-v2

 R_PKGNAME=		PHYLOGR
-R_PKGVER=		1.0.7
+R_PKGVER=		1.0.8

 post-extract:
 	echo 'exportPattern("^[^\\.]")' > ${WRKSRC}/NAMESPACE
--- a/math/R-PHYLOGR/distinfo
+++ b/math/R-PHYLOGR/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2012/04/15 14:48:26 brook Exp $
+$NetBSD: distinfo,v 1.5 2016/01/09 14:12:48 wen Exp $

-SHA1 (R/PHYLOGR_1.0.7.tar.gz) = bb7c280fef9c48a8ded1612c915323e6e77f831b
-RMD160 (R/PHYLOGR_1.0.7.tar.gz) = a342763177baef67e90e555bcdf3d2ed2efbfd68
-Size (R/PHYLOGR_1.0.7.tar.gz) = 751227 bytes
+SHA1 (R/PHYLOGR_1.0.8.tar.gz) = fb46e4fd7c864c3e046add49fb1a058efa760d6b
+RMD160 (R/PHYLOGR_1.0.8.tar.gz) = fdbc6fe77d1ed28c70a21cd90dbee57d78a8afc2
+SHA512 (R/PHYLOGR_1.0.8.tar.gz) = 0e3ffc5dbda2313b5d6d99332bf2ef94d48e8749c862269b8c058261c9bc9ad1bdaa045ef6b44e2cd43d4a91a40f2173e384757732728c415348118dcb4b2ca1
+Size (R/PHYLOGR_1.0.8.tar.gz) = 755144 bytes
--- a/math/R-R2HTML/Makefile
+++ b/math/R-R2HTML/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2012/04/15 14:51:05 brook Exp $
+# $NetBSD: Makefile,v 1.7 2016/01/09 14:17:37 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	R functions to write an HTML file
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	R2HTML
-R_PKGVER=	2.2
+R_PKGVER=	2.3.1

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-R2HTML/distinfo
+++ b/math/R-R2HTML/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2012/04/15 14:51:05 brook Exp $
+$NetBSD: distinfo,v 1.6 2016/01/09 14:17:37 wen Exp $

-SHA1 (R/R2HTML_2.2.tar.gz) = afd181886b3ba5c01a8ebdbed010a7477dca4b91
-RMD160 (R/R2HTML_2.2.tar.gz) = d088b22bcaea90835360926d5ad8172cdbe4f24c
-Size (R/R2HTML_2.2.tar.gz) = 315405 bytes
+SHA1 (R/R2HTML_2.3.1.tar.gz) = 35226853de2dbeb3fe6a3969b62ed98fbcf0292a
+RMD160 (R/R2HTML_2.3.1.tar.gz) = 18e22d3a79cb1c700abcf163ecb3fbba4c391efa
+SHA512 (R/R2HTML_2.3.1.tar.gz) = f71d3868433c55568d29f981c55149693f2c4d1e0d0a923befc55d8d028ad57ef6f5099e57b65bc8acc1e68c9c10b4a60f285858d1e2db1d897ddf2952d6fbc6
+Size (R/R2HTML_2.3.1.tar.gz) = 315433 bytes
--- a/math/R-RArcInfo/distinfo
+++ b/math/R-RArcInfo/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2012/04/15 16:57:19 brook Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/RArcInfo_0.4-12.tar.gz) = 26eea6768946ebb1cb722a3e41771c0d3e675ec5
 RMD160 (R/RArcInfo_0.4-12.tar.gz) = 2dfc012db4dd9c1ceb23c356054c924ce0334d5b
+SHA512 (R/RArcInfo_0.4-12.tar.gz) = ae975471f4076d5b54dd6f015097b882075af1007c82f9d6256afe36a5e94bda0f204f436112c8ca647cdaeb7d4cfbc34970d37a2ce19adef99b3bfd8a0612a4
 Size (R/RArcInfo_0.4-12.tar.gz) = 463131 bytes
--- a/math/R-RColorBrewer/distinfo
+++ b/math/R-RColorBrewer/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.2 2015/05/30 10:30:08 wen Exp $
+$NetBSD: distinfo,v 1.3 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/RColorBrewer_1.1-2.tar.gz) = ffe73355d888a62bcee6d25f6700c8a8fa6464d8
 RMD160 (R/RColorBrewer_1.1-2.tar.gz) = 2afaade6aaea039c3f60d1fa0a66612630cd3c58
+SHA512 (R/RColorBrewer_1.1-2.tar.gz) = 29eeecae274c57f2af3366d072fb6a61a1e0be64aae9393e10c7e92c3b98473b60b7042b532c49e0ce2f53e6dce1a728ddd6937bbc64cedcb3664a429c3e54da
 Size (R/RColorBrewer_1.1-2.tar.gz) = 11532 bytes
--- a/math/R-RPostgreSQL/distinfo
+++ b/math/R-RPostgreSQL/distinfo
@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.2 2012/04/16 00:43:40 brook Exp $
+$NetBSD: distinfo,v 1.3 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/RPostgreSQL_0.3-2.tar.gz) = cffa6237894727008d7079e24ab3a561ae139816
 RMD160 (R/RPostgreSQL_0.3-2.tar.gz) = 4c53b8183716455100883545465d3437e2ef17f9
+SHA512 (R/RPostgreSQL_0.3-2.tar.gz) = ace2a34c564527f0fe7322f2208cc6f1dd70d3d9f1899fb7df425e7608f3aa6ea8fb2f12ea978cc3ba24880e7ca198946f34ffbfec6e6f48a8de17d8cd6956a7
 Size (R/RPostgreSQL_0.3-2.tar.gz) = 470695 bytes
 SHA1 (patch-configure) = 6c73a381bc4ebf96466645902395b552e6abc21d
 SHA1 (patch-configure.in) = b9d242940d8ed1f24ec0456dc0f346c3fce2f33c
--- a/math/R-RandomFields/distinfo
+++ b/math/R-RandomFields/distinfo
@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.3 2013/08/30 13:05:00 joerg Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/RandomFields_2.0.66.tar.gz) = 58f5ec3c5c2995e88268bc4eaae0360b80dc636b
 RMD160 (R/RandomFields_2.0.66.tar.gz) = 8713109ab626cabf52b7a3a02ced34951843f373
+SHA512 (R/RandomFields_2.0.66.tar.gz) = fe8334614790acd391a103cae47a58fcc5d54e44dce6d79d6af6f2d8446148f9676717df4eb5a2b4b11f4ced9555cd055644f4a1e597384f8bc36aa515bbc39c
 Size (R/RandomFields_2.0.66.tar.gz) = 451832 bytes
 SHA1 (patch-src_MLE.cc) = 859ea7c42d6b680f7f03d81292f34df75249558f
 SHA1 (patch-src_getNset.cc) = 49d769a7254de108442a97d0966acb4110c9306f
--- a/math/R-Rcmdr/distinfo
+++ b/math/R-Rcmdr/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2012/04/15 15:49:00 brook Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/Rcmdr_1.8-4.tar.gz) = 2a05118e3acfe8d9ce33762f630b7a55253409ca
 RMD160 (R/Rcmdr_1.8-4.tar.gz) = 4fed94e6c871e4551ff34ec3782cf5a9148ac493
+SHA512 (R/Rcmdr_1.8-4.tar.gz) = 80c856e9db34c2a8dc13f8f9f026547ce823a42ea34b15d81b24535e80fa3aca21e73cb502f5e2042ef0036bd0c2c1385da11938bc5b4dd3ea4a4a8549ddb47c
 Size (R/Rcmdr_1.8-4.tar.gz) = 2610124 bytes
--- a/math/R-RcppEigen/DESCR
+++ b/math/R-RcppEigen/DESCR
@@ -0,0 +1,8 @@
+R and Eigen integration using Rcpp. Eigen is a C++ template library
+for linear algebra: matrices, vectors, numerical solvers and related
+algorithms. It supports dense and sparse matrices on integer,
+floating point and complex numbers, decompositions of such matrices,
+and solutions of linear systems. Its performance on many algorithms
+is comparable with some of the best implementations based on Lapack
+and level-3 BLAS. The RcppEigen package includes the header files
+from the Eigen C++ template library (currently version 3.2.2).
--- a/math/R-RcppEigen/Makefile
+++ b/math/R-RcppEigen/Makefile
@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.1 2016/07/27 03:53:50 wen Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/RcppEigen/
+COMMENT=	Rcpp integration for the Eigen templated linear algebra library
+LICENSE=	gnu-gpl-v2 OR gnu-gpl-v3
+
+R_PKGNAME=	RcppEigen
+R_PKGVER=	0.3.2.8.1
+
+USE_LANGUAGES=	c c++ fortran
+
+.include "../../devel/R-Rcpp/buildlink3.mk"
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-RcppEigen/distinfo
+++ b/math/R-RcppEigen/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2016/07/27 03:53:50 wen Exp $
+
+SHA1 (R/RcppEigen_0.3.2.8.1.tar.gz) = 4dd0664dd4cde479ed7f8b8b7d02974d4b85402e
+RMD160 (R/RcppEigen_0.3.2.8.1.tar.gz) = bfcfda699f96309c6b8cc63d3ac5cce6c227490e
+SHA512 (R/RcppEigen_0.3.2.8.1.tar.gz) = 335fb04c5e3ce73ef49108372c1f3e5510284a2847137b2063beef8a78cea5e7fa4aa303238f0e9bbd812989dcd286c8283336e09132a8788bb8f7888802af46
+Size (R/RcppEigen_0.3.2.8.1.tar.gz) = 1240083 bytes
--- a/math/R-SparseM/DESCR
+++ b/math/R-SparseM/DESCR
@@ -0,0 +1,3 @@
+Some basic linear algebra functionality for sparse matrices is provided:
+including Cholesky decomposition and backsolving as well as standard R
+subsetting and Kronecker products.
--- a/math/R-SparseM/Makefile
+++ b/math/R-SparseM/Makefile
@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.1 2016/01/01 05:23:13 wen Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/SparseM/
+COMMENT=	Sparse Linear Algebra
+LICENSE=	gnu-gpl-v2 OR gnu-gpl-v3
+
+R_PKGNAME=	SparseM
+R_PKGVER=	1.7
+
+USE_LANGUAGES=	c fortran
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-SparseM/distinfo
+++ b/math/R-SparseM/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2016/01/01 05:23:13 wen Exp $
+
+SHA1 (R/SparseM_1.7.tar.gz) = 137dd6627d948497b768509b83826f9211067db3
+RMD160 (R/SparseM_1.7.tar.gz) = 65d21275bc5c233963be32647175c1e8da7c90ee
+SHA512 (R/SparseM_1.7.tar.gz) = 3b45456fd4250cccdc62180e4103e04a7bfe4839f422aaa4eda852b0e44c7cb7476553565899f91ae05a2d4270168a4d1392ef1f1011ae3e72bc4a5aa6fcc40a
+Size (R/SparseM_1.7.tar.gz) = 598188 bytes
--- a/math/R-XML/distinfo
+++ b/math/R-XML/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2013/07/07 14:21:58 wen Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/XML_3.98-1.1.tar.gz) = a7dd9d9ed8b096150c457b76c4e3d795994f57b6
 RMD160 (R/XML_3.98-1.1.tar.gz) = 29f5e55c004df89e764fda007130d1e5171a42a6
+SHA512 (R/XML_3.98-1.1.tar.gz) = 82ac0192029528330146dd00fc1f73f55f1be2123279db94fd661a8dce63e3c1dbb5c5196025baefc0db80b4510174c7355d413b0f1f35310e35eee4ccae3d98
 Size (R/XML_3.98-1.1.tar.gz) = 1582216 bytes
--- a/math/R-abind/Makefile
+++ b/math/R-abind/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2012/04/15 14:55:50 brook Exp $
+# $NetBSD: Makefile,v 1.6 2016/07/27 02:37:10 wen Exp $
 #

 CATEGORIES=	math
@@ -10,7 +10,7 @@ COMMENT=	Combine multi-dimensional arrays
 LICENSE=	gnu-lgpl-v2

 R_PKGNAME=	abind
-R_PKGVER=	1.4-0
+R_PKGVER=	1.4-5

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-abind/distinfo
+++ b/math/R-abind/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.2 2012/04/15 14:55:50 brook Exp $
+$NetBSD: distinfo,v 1.4 2016/07/27 02:37:10 wen Exp $

-SHA1 (R/abind_1.4-0.tar.gz) = 93df0b3f0a57b8cba424354e5ec9779fc1bb3240
-RMD160 (R/abind_1.4-0.tar.gz) = 16fa9f565f41e380a8f7590508339d2ecb78e724
-Size (R/abind_1.4-0.tar.gz) = 19642 bytes
+SHA1 (R/abind_1.4-5.tar.gz) = 6b3d85631af7ab574f96c08a6d48ad8bfd281458
+RMD160 (R/abind_1.4-5.tar.gz) = c81ea303a1048e41df9b9e5ac929011bdb9faa74
+SHA512 (R/abind_1.4-5.tar.gz) = b1f5d716e04f748b9d189a4a3e15ad00c2b5a7c69425dbf9f36fcb4fe23f6ff5cec2eb22ec626ab194c1eb88bdfd271b535868b00157efd4acf0faa022d16987
+Size (R/abind_1.4-5.tar.gz) = 21810 bytes
--- a/math/R-akima/distinfo
+++ b/math/R-akima/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2012/04/15 15:09:26 brook Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/akima_0.5-7.tar.gz) = 7ba0f9510b49f6fcd617e891aa129ee29935a4ab
 RMD160 (R/akima_0.5-7.tar.gz) = e45b7312483873cba622d561460a986b0a60c7eb
+SHA512 (R/akima_0.5-7.tar.gz) = a2faccb5fd1d6c0cff77404e7eac6f22af60b8db19c15f19176343357ff1cc5fb1028f8e447b7058564769c698cc7538ffbcff101d6c1fd2fd57e3517c6dc091
 Size (R/akima_0.5-7.tar.gz) = 185681 bytes
--- a/math/R-bitops/distinfo
+++ b/math/R-bitops/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.2 2013/08/30 12:54:06 joerg Exp $
+$NetBSD: distinfo,v 1.3 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/bitops_1.0-6.tar.gz) = 4e97b33d767e5e5b9deae2f852131a7e78b01c6d
 RMD160 (R/bitops_1.0-6.tar.gz) = fd53672d70c5e0e9aa3837b77bb687a851794880
+SHA512 (R/bitops_1.0-6.tar.gz) = 0761883d2b0ff4cbb7908e4c1999f045a323c3094e0351e26e8bc9481c3922e60099fb7c3f2abf1e4b45b8a120e074d9d59678559fb4ab7d0ead59d07c6f2a2a
 Size (R/bitops_1.0-6.tar.gz) = 8734 bytes
--- a/math/R-car/distinfo
+++ b/math/R-car/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2013/08/15 01:56:37 wen Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:27 agc Exp $

 SHA1 (R/car_2.0-18.tar.gz) = f0fb53cedfe698acfe9fbbd5577fe72be11024ba
 RMD160 (R/car_2.0-18.tar.gz) = c2342b641dc8f5d1f4ce54c8577f8f8fe937d775
+SHA512 (R/car_2.0-18.tar.gz) = 36802e5fa300c178050c6c210d9c7d380a58c7561c0fee676f47f231685e569bf1463681cb8b611167d59789c9f2a74c6623b8161d4ef79a4872a5cca9d919f9
 Size (R/car_2.0-18.tar.gz) = 334622 bytes
--- a/math/R-chron/Makefile
+++ b/math/R-chron/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2014/08/26 14:08:02 brook Exp $
+# $NetBSD: Makefile,v 1.8 2016/02/25 19:33:05 fhajny Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Chronological objects which can handle dates and times
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	chron
-R_PKGVER=	2.3-45
+R_PKGVER=	2.3-47

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-chron/distinfo
+++ b/math/R-chron/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2014/08/26 14:08:02 brook Exp $
+$NetBSD: distinfo,v 1.7 2016/02/25 19:33:05 fhajny Exp $

-SHA1 (R/chron_2.3-45.tar.gz) = 63ca63d330a31f04cbdcf997fb30f3ed247b47f0
-RMD160 (R/chron_2.3-45.tar.gz) = 27a1be0d6ce550b6730a44aa67782fdb4f6677bd
-Size (R/chron_2.3-45.tar.gz) = 36242 bytes
+SHA1 (R/chron_2.3-47.tar.gz) = 41a5a1ebf21b8d71a3180aac2067771c06ddcc3b
+RMD160 (R/chron_2.3-47.tar.gz) = f74454d3d8e87f59682a09ed9656705554ff949c
+SHA512 (R/chron_2.3-47.tar.gz) = c98cbb717e7384797d17ea35f17ad0107e4cb5bfe4f5c9bff9f230fa500879d662699628eea7a8741572c0cfa5d90c4d63e04d1cc0a1d0b4405156cbc758d8fc
+Size (R/chron_2.3-47.tar.gz) = 36464 bytes
--- a/math/R-circular/distinfo
+++ b/math/R-circular/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2014/03/09 14:15:43 wen Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/circular_0.4-7.tar.gz) = 8ea66b61caee8050c59ad042b4749d38b2241965
 RMD160 (R/circular_0.4-7.tar.gz) = 464ae35414fb930531f512e78864db4425bd6c26
+SHA512 (R/circular_0.4-7.tar.gz) = d646de5044f2b558c99d8ddee5eda01fe7bccf993a229d6fc591016f95107e193fbf8f54932b1410742aff7bb9357e105f57816878d2bb7b6f62fe44039b89ad
 Size (R/circular_0.4-7.tar.gz) = 181031 bytes
--- a/math/R-classInt/Makefile
+++ b/math/R-classInt/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2012/04/15 16:00:01 brook Exp $
+# $NetBSD: Makefile,v 1.7 2016/01/01 12:25:21 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Package for choosing univariate class intervals for graphics
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	classInt
-R_PKGVER=	0.1-17
+R_PKGVER=	0.1-23

 USE_LANGUAGES=	c fortran

--- a/math/R-classInt/distinfo
+++ b/math/R-classInt/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2012/04/15 16:00:01 brook Exp $
+$NetBSD: distinfo,v 1.5 2016/01/01 12:25:21 wen Exp $

-SHA1 (R/classInt_0.1-17.tar.gz) = 845758790eee6b2e56e0e431614b40e9c3d245c8
-RMD160 (R/classInt_0.1-17.tar.gz) = 4a6ea5ea5357daf49f9554074d65236df1bc2d85
-Size (R/classInt_0.1-17.tar.gz) = 18642 bytes
+SHA1 (R/classInt_0.1-23.tar.gz) = b560a589205bffe298d8d7f4280e19b1b11adf9f
+RMD160 (R/classInt_0.1-23.tar.gz) = 08061ba4911c99c0aa7e6487909b0c06c2f63a59
+SHA512 (R/classInt_0.1-23.tar.gz) = c5e945fff7925a2a9546494c212665088f6df4bbf93442628c8324b7e149dad80d282fb3df493e29a61292b937bb40ce5417ff40bfa6e451318d58ffc201ae54
+Size (R/classInt_0.1-23.tar.gz) = 18917 bytes
--- a/math/R-clim.pact/distinfo
+++ b/math/R-clim.pact/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2012/04/15 16:15:31 brook Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/clim.pact_2.3-10.tar.gz) = e862068cda1141d078cb68c76f0f9b7167cdef13
 RMD160 (R/clim.pact_2.3-10.tar.gz) = a7cf28ecaeb7ca1b1c91e01d30cc0c6223afd5b1
+SHA512 (R/clim.pact_2.3-10.tar.gz) = 320ff83f9a5722833859353084bafaf4a1704f6614e6f766740682db4226c079dd55083a22c5d2a9a7171f1966a07cdf5fd366f85d9e770d0fa4240b04984132
 Size (R/clim.pact_2.3-10.tar.gz) = 5860859 bytes
--- a/math/R-combinat/distinfo
+++ b/math/R-combinat/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2011/11/06 22:24:45 mishka Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/combinat_0.0-8.tar.gz) = e6304b28245ee27747ded378406f64c106e8389b
 RMD160 (R/combinat_0.0-8.tar.gz) = eee75e95af8ada7987aa26336a1faa34aad5a2ca
+SHA512 (R/combinat_0.0-8.tar.gz) = 4fd5d354f7c48b56ad918e666b04d36a7ee56cfd699a5c2b60dae4908de448403b3f71884a4ac7769eb4df4354c749fc15d0fecb648c16e65bf670d2a709e625
 Size (R/combinat_0.0-8.tar.gz) = 7973 bytes
--- a/math/R-date/distinfo
+++ b/math/R-date/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2014/08/28 03:14:39 brook Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/date_1.2-34.tar.gz) = da06368bca031a563d5f1b81ed85955305270414
 RMD160 (R/date_1.2-34.tar.gz) = 4dcb0ad1d0c1f9b8e49389c7f0b31fda7b7bef7e
+SHA512 (R/date_1.2-34.tar.gz) = d284bf20efef949e2044663ba84c3dad0ac6ddd29517f82bdbceef54bf8bca28eadea0b573ef32f04b6287a309d48692bd1510e815489afd7c586532dee6c47a
 Size (R/date_1.2-34.tar.gz) = 9791 bytes
--- a/math/R-e1071/Makefile
+++ b/math/R-e1071/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2013/08/15 09:34:23 wen Exp $
+# $NetBSD: Makefile,v 1.5 2016/01/01 12:03:03 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Misc Functions of the Department of Statistics (e1071), TU Wien
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	e1071
-R_PKGVER=	1.6-1
+R_PKGVER=	1.6-7

 USE_LANGUAGES=	c c++

--- a/math/R-e1071/distinfo
+++ b/math/R-e1071/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2013/08/15 09:34:23 wen Exp $
+$NetBSD: distinfo,v 1.6 2016/01/01 12:03:03 wen Exp $

-SHA1 (R/e1071_1.6-1.tar.gz) = d95d38445003a8120fc96e73667c9bdd90b77392
-RMD160 (R/e1071_1.6-1.tar.gz) = 76b0f58d4eb758d21795ac1e9a0fb93d6193f319
-Size (R/e1071_1.6-1.tar.gz) = 258910 bytes
+SHA1 (R/e1071_1.6-7.tar.gz) = 5c495353a4cb4a557d92d824e4aa2ad608ac5c37
+RMD160 (R/e1071_1.6-7.tar.gz) = 36274a1d3bcd896f1885f4b45de9ed7a580c5e68
+SHA512 (R/e1071_1.6-7.tar.gz) = 08c11ffddc46ea500320ee30cb800be4da96ea4bc174d82a6cc1c42a11a1e37534b1607367fa776024f559b648ca72af55e11b500f418feae7ace2f059c47e72
+Size (R/e1071_1.6-7.tar.gz) = 600498 bytes
--- a/math/R-gdata/Makefile
+++ b/math/R-gdata/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.9 2015/06/12 10:50:27 wiz Exp $
+# $NetBSD: Makefile,v 1.10 2016/07/09 06:38:32 wiz Exp $

-PKGREVISION=	4
+PKGREVISION=	5
 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}

--- a/math/R-gdata/distinfo
+++ b/math/R-gdata/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2012/04/15 16:12:28 brook Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/gdata_2.8.2.tar.gz) = ddfd4befdc283eeda39aba14215a7cd428e1042b
 RMD160 (R/gdata_2.8.2.tar.gz) = 1be56ea4950349b85317b905aecb2143523ad4bd
+SHA512 (R/gdata_2.8.2.tar.gz) = e4d57a9cca39dda329913f6c768d464d0e014d8ab1ed52eeea85918080828046cb134ca8d96e0cef0c1b2f9ce2058035016f020b9a21f67c70bd2055294a387a
 Size (R/gdata_2.8.2.tar.gz) = 631443 bytes
--- a/math/R-genetics/Makefile
+++ b/math/R-genetics/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.9 2015/06/12 10:50:27 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2016/07/09 06:38:32 wiz Exp $
 #

-PKGREVISION=	3
+PKGREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}

@@ -13,7 +13,7 @@ LICENSE=	gnu-gpl-v3
 USE_TOOLS+=	perl

 R_PKGNAME=	genetics
-R_PKGVER=	1.3.8
+R_PKGVER=	1.3.8.1

 DEPENDS+=	R-combinat>=0.0.8:../../math/R-combinat
 DEPENDS+=	R-gdata>=2.8.2:../../math/R-gdata
--- a/math/R-genetics/distinfo
+++ b/math/R-genetics/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2013/01/24 02:24:15 wen Exp $
+$NetBSD: distinfo,v 1.7 2016/04/09 13:34:16 wen Exp $

-SHA1 (R/genetics_1.3.8.tar.gz) = f1bd9f75da1aedf4aaa7d3ee81d422c25ba03e8f
-RMD160 (R/genetics_1.3.8.tar.gz) = cde22d63c019171360a9baee6a2843f731d96bb2
-Size (R/genetics_1.3.8.tar.gz) = 210785 bytes
+SHA1 (R/genetics_1.3.8.1.tar.gz) = 9ff973ff6e23b8607c11316e1a4934490d7ea546
+RMD160 (R/genetics_1.3.8.1.tar.gz) = 1cec60c9063f93e4da6b78f58f52b64cecddfaae
+SHA512 (R/genetics_1.3.8.1.tar.gz) = 2ff842fc40da0d8e1dd1aab4b5897d8406438c003b25ba9bc289d3720cf2e7a5dabf82c63172a24a150ebe96ccad9506ea25aac239c08c6ff7614885851bdfd7
+Size (R/genetics_1.3.8.1.tar.gz) = 199642 bytes
--- a/math/R-geoR/Makefile
+++ b/math/R-geoR/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.9 2013/04/06 03:45:16 rodent Exp $
+# $NetBSD: Makefile,v 1.10 2016/02/24 06:41:46 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Geostatistical analysis including likelihood-based & Bayesian methods
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	geoR
-R_PKGVER=	1.7-2
+R_PKGVER=	1.7-5.1

 DEPENDS+=	R-RandomFields>=2.0.54:../../math/R-RandomFields
 DEPENDS+=	R-sp>=0.9.98:../../math/R-sp
--- a/math/R-geoR/distinfo
+++ b/math/R-geoR/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2012/04/01 18:09:54 brook Exp $
+$NetBSD: distinfo,v 1.7 2016/02/24 06:41:46 wen Exp $

-SHA1 (R/geoR_1.7-2.tar.gz) = a3e47912f21381c088272a03c6a1bfb31c5bcc20
-RMD160 (R/geoR_1.7-2.tar.gz) = b1c61997ba692b1da063b42c20bec0af817de6ec
-Size (R/geoR_1.7-2.tar.gz) = 411279 bytes
+SHA1 (R/geoR_1.7-5.1.tar.gz) = 0f6c795a67a9155a158b1f8ccb122277fb38b72f
+RMD160 (R/geoR_1.7-5.1.tar.gz) = 5afa74049928448cbfe2581f60fd16a293f44d76
+SHA512 (R/geoR_1.7-5.1.tar.gz) = 69f20e829f68c1521d49b572b74de3ec9cadd83f73d9428a3f37ccc9a4bd4c1bb8f25f30fc77a270c1dcde853986f1a6a19fb0b3014e709fd92d52278ba5fade
+Size (R/geoR_1.7-5.1.tar.gz) = 421558 bytes
--- a/math/R-geoRglm/Makefile
+++ b/math/R-geoRglm/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.1.1.1 2012/04/15 22:14:29 brook Exp $
+# $NetBSD: Makefile,v 1.2 2016/02/24 06:46:39 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,9 +9,9 @@ COMMENT=	Generalised linear spatial models in R
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	geoRglm
-R_PKGVER=	0.9-2
+R_PKGVER=	0.9-8

-DEPENDS+=	R-geoR>=1.7.2:../../math/R-geoR
+DEPENDS+=	R-geoR>=1.7.5:../../math/R-geoR

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-geoRglm/distinfo
+++ b/math/R-geoRglm/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.1.1.1 2012/04/15 22:14:29 brook Exp $
+$NetBSD: distinfo,v 1.3 2016/02/24 06:46:39 wen Exp $

-SHA1 (R/geoRglm_0.9-2.tar.gz) = e9e518619355d5866c8abd0e5583c0e07c7b31ba
-RMD160 (R/geoRglm_0.9-2.tar.gz) = fab25609324e9bb4e170c4ae57c2201a8cc05e94
-Size (R/geoRglm_0.9-2.tar.gz) = 192901 bytes
+SHA1 (R/geoRglm_0.9-8.tar.gz) = 8beb214578ef6efe02dbf7aa620da974d1fd8154
+RMD160 (R/geoRglm_0.9-8.tar.gz) = 67147aa0dc49f8902912b2f5418af425367e644a
+SHA512 (R/geoRglm_0.9-8.tar.gz) = ae62b273a18f0cfe8b96c54f781c37f4d3ca8aa41eba36901bc98ee2743f13da32efc597653e1df6b85e3e8cba3106be920968491972d566aefbfa5d208ed7a8
+Size (R/geoRglm_0.9-8.tar.gz) = 201150 bytes
--- a/math/R-gstat/Makefile
+++ b/math/R-gstat/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2013/01/24 01:51:13 wen Exp $
+# $NetBSD: Makefile,v 1.8 2016/02/25 01:59:08 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,10 +9,13 @@ COMMENT=	Uni/multivariable geostatistical modelling, prediction and simulation
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	gstat
-R_PKGVER=	1.0-15
+R_PKGVER=	1.1-2

 DEPENDS+=	R-sp>=0.9.98:../../math/R-sp
 DEPENDS+=	R-spacetime>=1.0.0:../../math/R-spacetime
+DEPENDS+=	R-FNN>=0:../../math/R-FNN

 .include "../../math/R/Makefile.extension"
+.include "../../math/blas/buildlink3.mk"
+.include "../../lang/g95/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-gstat/distinfo
+++ b/math/R-gstat/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2013/01/24 01:51:13 wen Exp $
+$NetBSD: distinfo,v 1.7 2016/02/25 01:59:08 wen Exp $

-SHA1 (R/gstat_1.0-15.tar.gz) = 56b866ecd9db30a96756084f927ed878b1ee7745
-RMD160 (R/gstat_1.0-15.tar.gz) = 37db644464ea354e2df16c4b7d1e5b48e399e0c3
-Size (R/gstat_1.0-15.tar.gz) = 2029233 bytes
+SHA1 (R/gstat_1.1-2.tar.gz) = 1c1770159afd40238d790b8dddad00256fabdfc5
+RMD160 (R/gstat_1.1-2.tar.gz) = 5e23bd6198fc3603f7ceffef0dd08d7dbf78dc17
+SHA512 (R/gstat_1.1-2.tar.gz) = 6240d43b89642fb08447fd315c570457640fddc28af4f193e11e15dc42314b2eb8fe44750eb742532667d64db069420e609d247179dbff05676dce2a2c56e289
+Size (R/gstat_1.1-2.tar.gz) = 2618748 bytes
--- a/math/R-gtools/distinfo
+++ b/math/R-gtools/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2012/04/15 15:26:35 brook Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/gtools_2.6.2.tar.gz) = acbf981bf6c0ce9248a7852fe89c8ad295c4e9d9
 RMD160 (R/gtools_2.6.2.tar.gz) = bb4598020e8299ea173b34e765cf80e18b0fb31a
+SHA512 (R/gtools_2.6.2.tar.gz) = b27d7edf922e73d591b71688f2e37c565181b1535c1e961a1ead6a07855632fd153de83656a39ea93987471f571396a8fdaed86efb5a11f1586f5ec090bc2322
 Size (R/gtools_2.6.2.tar.gz) = 46942 bytes
--- a/math/R-httpRequest/distinfo
+++ b/math/R-httpRequest/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2013/08/30 12:57:15 joerg Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:28 agc Exp $

 SHA1 (R/httpRequest_0.0.9.tar.gz) = 8da0cd4adf61e11435a3f0003ebb1b72a82ca8ad
 RMD160 (R/httpRequest_0.0.9.tar.gz) = 8ce3914ea252eb35d0737092f917db2aa4ae9a47
+SHA512 (R/httpRequest_0.0.9.tar.gz) = 8d6762977e04cf94b3ff54346cbce54cd140c9eb7a413472848d0af657ff3c6aed6df80a2f7a10aa618766ae8b1321d9d6a737cc91953c481db4b4cab3495d7f
 Size (R/httpRequest_0.0.9.tar.gz) = 4449 bytes
--- a/math/R-hwde/Makefile
+++ b/math/R-hwde/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2013/08/30 12:58:11 joerg Exp $
+# $NetBSD: Makefile,v 1.8 2016/04/09 11:14:28 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Models and tests for departure from Hardy-Weinberg equilibrium
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	hwde
-R_PKGVER=	0.63
+R_PKGVER=	0.67

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-hwde/distinfo
+++ b/math/R-hwde/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2013/08/30 12:58:11 joerg Exp $
+$NetBSD: distinfo,v 1.7 2016/04/09 11:14:28 wen Exp $

-SHA1 (R/hwde_0.63.tar.gz) = cebe0a934793bdea9d5fb593cccf93a4822c3fba
-RMD160 (R/hwde_0.63.tar.gz) = 221299a07cae8de959a8fa2b78bb5fe3f7dd47a1
-Size (R/hwde_0.63.tar.gz) = 129399 bytes
+SHA1 (R/hwde_0.67.tar.gz) = 3b63d620af7aef39b34c3ee877c7593dd12a19f1
+RMD160 (R/hwde_0.67.tar.gz) = dba48e2b68dc1a7563a0c73bd6f7bf88d673a45e
+SHA512 (R/hwde_0.67.tar.gz) = 8ea813e78d36f0fd843803a10d050cee92b8de120fd05ff14045ccf0e180c8c1fc63ba66033a72826936eb65a52c2f14517549af0fef02c37d75a9c91afddcf9
+Size (R/hwde_0.67.tar.gz) = 130727 bytes
--- a/math/R-intervals/Makefile
+++ b/math/R-intervals/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2015/05/31 14:00:12 wen Exp $
+# $NetBSD: Makefile,v 1.4 2016/04/29 14:29:10 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -11,7 +11,7 @@ LICENSE=	artistic-2.0
 USE_LANGUAGES=	c++

 R_PKGNAME=	intervals
-R_PKGVER=	0.15.0
+R_PKGVER=	0.15.1

 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-intervals/distinfo
+++ b/math/R-intervals/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2015/05/31 14:00:12 wen Exp $
+$NetBSD: distinfo,v 1.6 2016/04/29 14:29:10 wen Exp $

-SHA1 (R/intervals_0.15.0.tar.gz) = cfa6062725b32696bc89ebf01c4f16157822986a
-RMD160 (R/intervals_0.15.0.tar.gz) = 1d4418ba472a51fb5df70524a558cc5e8f36cbb4
-Size (R/intervals_0.15.0.tar.gz) = 393180 bytes
+SHA1 (R/intervals_0.15.1.tar.gz) = 33a5e484559af70e1b2be396c058baeaf43405a9
+RMD160 (R/intervals_0.15.1.tar.gz) = 8ec3890611ff01d3f7023c5884a2052b0478736d
+SHA512 (R/intervals_0.15.1.tar.gz) = 44c0117332d654795c6ed3fba2f752e7369e2e0f9988dd4797f744b97bbd6e18e6870b7068a382bec02bccc477932a7da88bd78e589463ff0ec9e1b56418e4a1
+Size (R/intervals_0.15.1.tar.gz) = 393014 bytes
--- a/math/R-lmm/distinfo
+++ b/math/R-lmm/distinfo
@@ -1,6 +1,7 @@
-$NetBSD: distinfo,v 1.6 2015/05/31 13:01:35 wen Exp $
+$NetBSD: distinfo,v 1.7 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/lmm_1.0.tar.gz) = bb11076bea46b26395bf34188b45ac66b88fd85b
 RMD160 (R/lmm_1.0.tar.gz) = 9bb93d91af2403ec3e71a2cd15bf99a8f2ec3ff6
+SHA512 (R/lmm_1.0.tar.gz) = f94865125a694fb3f970379479bb0f9918150bd4ae1f9832935d03952867aa0febe168aee6e93ee9ae7d9a6102d8cde84b579691f4e3acc0ed3dc1ac6ab152b7
 Size (R/lmm_1.0.tar.gz) = 454069 bytes
 SHA1 (patch-aa) = 85195d02f6be923e38aa5536f48f19b91d47269c
--- a/math/R-mapproj/distinfo
+++ b/math/R-mapproj/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.6 2015/05/31 12:57:10 wen Exp $
+$NetBSD: distinfo,v 1.7 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/mapproj_1.2-2.tar.gz) = 953d2601c274ef6681b6e2e5d3c81a8984077fe3
 RMD160 (R/mapproj_1.2-2.tar.gz) = 4d50d09931d503dd77b7937fd5c1b22915ac522e
+SHA512 (R/mapproj_1.2-2.tar.gz) = 62659a9cc4a547d040744995553a8a71c8e5737eece4e3ba24e8a3f91a98a46af0941f7b16b5d0ed110f76d32025864bb673a2f289ea42c8135675e1e9d0c3b5
 Size (R/mapproj_1.2-2.tar.gz) = 25320 bytes
--- a/math/R-maps/Makefile
+++ b/math/R-maps/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.8 2015/05/31 12:04:11 wen Exp $
+# $NetBSD: Makefile,v 1.10 2016/09/29 12:10:50 joerg Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -11,5 +11,8 @@ LICENSE=	gnu-gpl-v2
 R_PKGNAME=	maps
 R_PKGVER=	2.3-9

+USE_TOOLS+=	gmake
+MAKE_ENV+=	AWK=${AWK:Q}
+
 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
--- a/math/R-maps/distinfo
+++ b/math/R-maps/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.6 2015/05/31 12:04:11 wen Exp $
+$NetBSD: distinfo,v 1.7 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/maps_2.3-9.tar.gz) = f245b16f6ef1dd98bcc483a431276c139f74fbb9
 RMD160 (R/maps_2.3-9.tar.gz) = b923d8928e016b3b4e3aa106b4c9ea8cd3b88fc8
+SHA512 (R/maps_2.3-9.tar.gz) = 9fbbd98bb15af020698ecb2d210c491d95e7b2fb2340a95fc08679a19bc22fcbb5a7fb37dff66368021e3ceaaae5a81e97b42130a2f7fe39ed18d18bdaa884ec
 Size (R/maps_2.3-9.tar.gz) = 1428724 bytes
--- a/math/R-minqa/DESCR
+++ b/math/R-minqa/DESCR
@@ -0,0 +1,2 @@
+Derivative-free optimization by quadratic approximation based on
+an interface to Fortran implementations by M. J. D. Powell.
--- a/math/R-minqa/Makefile
+++ b/math/R-minqa/Makefile
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2015/10/05 01:12:46 wen Exp $
+#
+
+CATEGORIES=		math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/minqa/
+COMMENT=	Derivative-free optimization algorithms by quadratic approximation
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	minqa
+R_PKGVER=	1.2.4
+
+USE_LANGUAGES=	c++ fortran
+
+.include "../../math/R/Makefile.extension"
+.include "../../devel/R-Rcpp/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-minqa/distinfo
+++ b/math/R-minqa/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.2 2015/11/03 23:33:29 agc Exp $
+
+SHA1 (R/minqa_1.2.4.tar.gz) = 1f61420fc334a73a079d6b2b8c39c552826ca7d5
+RMD160 (R/minqa_1.2.4.tar.gz) = 347f9881f10d0136379235b5e75d32f892e6e40b
+SHA512 (R/minqa_1.2.4.tar.gz) = 1f21e661b6bb8bad5074d2ac579ec0fa031a149c52dc22bc5d73927bfc71ac9bfbf73b01730288f5f4a9930aca53e838e028772996b2860a4f5578a151f61967
+Size (R/minqa_1.2.4.tar.gz) = 53548 bytes
--- a/math/R-mvtnorm/Makefile
+++ b/math/R-mvtnorm/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.11 2015/05/31 11:57:03 wen Exp $
+# $NetBSD: Makefile,v 1.12 2016/04/13 14:23:29 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Computes the multivariate normal and t distribution
 LICENSE=	gnu-gpl-v2

 R_PKGNAME=	mvtnorm
-R_PKGVER=	1.0-2
+R_PKGVER=	1.0-5

 USE_LANGUAGES=	c fortran

--- a/math/R-mvtnorm/distinfo
+++ b/math/R-mvtnorm/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2015/05/31 11:57:03 wen Exp $
+$NetBSD: distinfo,v 1.7 2016/04/13 14:23:29 wen Exp $

-SHA1 (R/mvtnorm_1.0-2.tar.gz) = 0e579278b1c961695b03837b141116f44554b1a9
-RMD160 (R/mvtnorm_1.0-2.tar.gz) = c8378d6d6e0805a322c11a78109eec29f3f07fee
-Size (R/mvtnorm_1.0-2.tar.gz) = 155092 bytes
+SHA1 (R/mvtnorm_1.0-5.tar.gz) = 4f10502e670ad886c2d392e934fedffadd565e30
+RMD160 (R/mvtnorm_1.0-5.tar.gz) = e2b93bf184138798629c3cddaa9aa04ef555d441
+SHA512 (R/mvtnorm_1.0-5.tar.gz) = 43684a927ffe5520b53c13ecc8dca62c5e82756ccf378962397359697db06f1dcb3cf6e26fadfc15aa2516ddfc980910696ebe069ed36db95e3771ef45aa6c0c
+Size (R/mvtnorm_1.0-5.tar.gz) = 158480 bytes
--- a/math/R-ncdf/Makefile
+++ b/math/R-ncdf/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.6 2014/02/12 23:18:10 tron Exp $
+# $NetBSD: Makefile,v 1.7 2016/03/05 11:28:52 jperkin Exp $
 #

-PKGREVISION=	2
+PKGREVISION=	3
 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}

--- a/math/R-ncdf/distinfo
+++ b/math/R-ncdf/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2012/04/15 15:39:34 brook Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/ncdf_1.6.6.tar.gz) = d4f31681bb423693e60f3bfbd6c85a03d65bfa94
 RMD160 (R/ncdf_1.6.6.tar.gz) = 8d33e7729674fccf6bcfdbc1709230402dd7229a
+SHA512 (R/ncdf_1.6.6.tar.gz) = ae673e94c0357d7366dec202a250610d728777d5a16ff3e71c860141e08acc4e055851c9d34a2c4d94f23e0c866232977eca01b4f68393ad71e9082b7562edee
 Size (R/ncdf_1.6.6.tar.gz) = 79403 bytes
--- a/math/R-nloptr/DESCR
+++ b/math/R-nloptr/DESCR
@@ -0,0 +1,4 @@
+nloptr is an R interface to NLopt. NLopt is a free/open-source library
+for nonlinear optimization, providing a common interface for a number
+of different free optimization routines available online as well as
+original implementations of various other algorithms.
--- a/math/R-nloptr/Makefile
+++ b/math/R-nloptr/Makefile
@@ -0,0 +1,25 @@
+# $NetBSD: Makefile,v 1.1 2016/04/17 04:09:44 wen Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/nloptr/
+COMMENT=	R interface to NLopt
+LICENSE=	gnu-lgpl-v3
+
+R_PKGNAME=	nloptr
+R_PKGVER=	1.0.4
+
+USE_LANGUAGES=	c c++
+
+SUBST_CLASSES+=		conf
+SUBST_STAGE.conf=	post-patch
+SUBST_FILES.conf+=	configure
+SUBST_MESSAGE.conf=	Fixing redirection of configure.
+SUBST_SED.conf=		-e "s,<<<,<,g"
+
+.include "../../math/R/Makefile.extension"
+.include "../../math/nlopt/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-nloptr/distinfo
+++ b/math/R-nloptr/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2016/04/17 04:09:44 wen Exp $
+
+SHA1 (R/nloptr_1.0.4.tar.gz) = 96a408dd280081c4ee4e56050afd317e8c3cfef9
+RMD160 (R/nloptr_1.0.4.tar.gz) = 2d28e16b635bcaaceb108a0a96d21ba621b8955f
+Size (R/nloptr_1.0.4.tar.gz) = 353942 bytes
+SHA1 (patch-configure) = edadaf36dce4e3ff1b762dee7842ad63ca67603d
--- a/math/R-nloptr/patches/patch-configure
+++ b/math/R-nloptr/patches/patch-configure
@@ -0,0 +1,15 @@
+$NetBSD: patch-configure,v 1.1 2016/04/17 04:09:44 wen Exp $
+Fix usage of conditionals in configure
+--- configure.orig	2015-11-28 07:01:04.000000000 +0000
+++ configure
+@@ -2953,8 +2953,8 @@ fi
+ 
+ ## also use pkg-config to check for NLopt
+ ##
+-if test x"${nlopt_libs}" == x""; then
+-    if test x"${PKGCONFIG}" == x"yes"; then
+if test x"${nlopt_libs}" = x""; then
+    if test x"${PKGCONFIG}" = x"yes"; then
+         ## check via pkg-config for hiredis
+         if pkg-config --exists nlopt; then
+             ## obtain cflags and obtain libs
--- a/math/R-pixmap/distinfo
+++ b/math/R-pixmap/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2012/04/15 15:38:14 brook Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/pixmap_0.4-11.tar.gz) = 5a99bae7891354ac792372fa6a27430e36e5ade2
 RMD160 (R/pixmap_0.4-11.tar.gz) = 2c165a50a62aba32c5d0be74c839e20f1717efa8
+SHA512 (R/pixmap_0.4-11.tar.gz) = 7445c582f9aec9f352717cd21de88c3da7fd768100563f9bbebe043e477676665206426651c704fce370f1b6d12177d12f715fb42f77f123e0ef15ccfe5e53f8
 Size (R/pixmap_0.4-11.tar.gz) = 34461 bytes
--- a/math/R-plyr/Makefile
+++ b/math/R-plyr/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2015/05/31 03:54:07 wen Exp $
+# $NetBSD: Makefile,v 1.5 2016/04/09 08:30:36 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,9 +9,9 @@ COMMENT=	Tools for splitting, applying and combining data
 LICENSE=	mit

 R_PKGNAME=	plyr
-R_PKGVER=	1.8.2
+R_PKGVER=	1.8.3

-USE_LANGUAGES+=	c++
+USE_LANGUAGES+=	c c++

 .include "../../math/R/Makefile.extension"
 .include "../../devel/R-Rcpp/buildlink3.mk"
--- a/math/R-plyr/distinfo
+++ b/math/R-plyr/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2015/05/31 03:54:07 wen Exp $
+$NetBSD: distinfo,v 1.5 2016/04/09 08:30:36 wen Exp $

-SHA1 (R/plyr_1.8.2.tar.gz) = b0e3371ca8857e82a3993e006e7dda0f3b3919b8
-RMD160 (R/plyr_1.8.2.tar.gz) = bc1ebc46e8b91d13519bb60ba94dff95e24fe235
-Size (R/plyr_1.8.2.tar.gz) = 392136 bytes
+SHA1 (R/plyr_1.8.3.tar.gz) = 61e21401e64ba17407b548d9301d66522e18f713
+RMD160 (R/plyr_1.8.3.tar.gz) = 9ee392e6bea7d195ded525214fc98d931fb1e43d
+SHA512 (R/plyr_1.8.3.tar.gz) = 2dd8a2629ea94b1345d77ae8298e7616e2e3d151a7206145903c2454dd6630a957f7351a2fa4b4002a7a15253e980637a6b0686136bd8a19b70744a72fe2851d
+Size (R/plyr_1.8.3.tar.gz) = 392337 bytes
--- a/math/R-quantreg/DESCR
+++ b/math/R-quantreg/DESCR
@@ -0,0 +1,5 @@
+Estimation and inference methods for models of conditional quantiles:
+Linear and nonlinear parametric and non-parametric (total variation
+penalized) models for conditional quantiles of a univariate response
+and several methods for handling censored survival data. Portfolio
+selection methods based on expected shortfall risk are also included.
--- a/math/R-quantreg/Makefile
+++ b/math/R-quantreg/Makefile
@@ -0,0 +1,22 @@
+# $NetBSD: Makefile,v 1.2 2016/04/09 11:08:45 wen Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/quantreg/
+COMMENT=	Quantile Regression
+LICENSE=	gnu-gpl-v2 OR gnu-gpl-v3
+
+R_PKGNAME=	quantreg
+R_PKGVER=	5.21
+
+USE_LANGUAGES=	c fortran
+
+DEPENDS+=	R-SparseM>=0:../../math/R-SparseM \
+		R-MatrixModels>=0:../../math/R-MatrixModels
+
+.include "../../math/blas/buildlink3.mk"
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
--- a/math/R-quantreg/distinfo
+++ b/math/R-quantreg/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.2 2016/04/09 11:08:45 wen Exp $
+
+SHA1 (R/quantreg_5.21.tar.gz) = de78fc22b52b5672047e2f331ba97d5363795928
+RMD160 (R/quantreg_5.21.tar.gz) = 591e5d640e5fad8631f2ba9ebe5038360785500e
+SHA512 (R/quantreg_5.21.tar.gz) = 96d2323eb55f0402e0f339f5084ccee69f74091ad4851e3a15a3bc58d14ddcc77fc43bb049b5fa47dea16b9527b9672d0c50d2bff6db752731ab9e5fe270fd8e
+Size (R/quantreg_5.21.tar.gz) = 1718934 bytes
--- a/math/R-randomForest/distinfo
+++ b/math/R-randomForest/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2015/05/31 02:38:49 wen Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/randomForest_4.6-10.tar.gz) = 783a11470ec41e3a517e349288edef4825c56ec9
 RMD160 (R/randomForest_4.6-10.tar.gz) = bae834a90ae9d42f9a0e473c4a573413b4b06cd7
+SHA512 (R/randomForest_4.6-10.tar.gz) = 47ed09cdea58bc296f8a235d1d13457b10709f58e29a86445c98b66b9e02232cc60b19d725af7f56283366eb34ba857b0ba8d8e73adc93f0ed20eff400a9faae
 Size (R/randomForest_4.6-10.tar.gz) = 79096 bytes
--- a/math/R-sgeostat/distinfo
+++ b/math/R-sgeostat/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2013/07/07 12:10:58 wen Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/sgeostat_1.0-25.tar.gz) = f8e614ddcaf7cd1e26009640f1a4bb5280d84519
 RMD160 (R/sgeostat_1.0-25.tar.gz) = c79dd4e34efaaa3c27954c7ccb038445e686aec5
+SHA512 (R/sgeostat_1.0-25.tar.gz) = 67befd4fe087a8ad69839561176b4bb3d15ea52388c08fd6c758d26a610a3d1b8b8ff97d774bb3b3799c3d29b97775f0fe32da89ecc882c2d2f48b4d232edc88
 Size (R/sgeostat_1.0-25.tar.gz) = 97869 bytes
--- a/math/R-shapefiles/distinfo
+++ b/math/R-shapefiles/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2013/07/07 12:02:36 wen Exp $
+$NetBSD: distinfo,v 1.4 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/shapefiles_0.7.tar.gz) = fd71241059eea4bef0a7bf644861df8ab0c7a606
 RMD160 (R/shapefiles_0.7.tar.gz) = 95d784b3c4e864f4db1ac3949a5022608e72127f
+SHA512 (R/shapefiles_0.7.tar.gz) = 864bbb25d096445323f6a69846c2ba9ead9ec440736ded35fda4cf953ba079310125fedd1c72d1daca9f36a58ba0d5ffc26dc79009f55c0a45d2b1cd1092f327
 Size (R/shapefiles_0.7.tar.gz) = 10589 bytes
--- a/math/R-sp/distinfo
+++ b/math/R-sp/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.8 2015/05/30 11:05:17 wen Exp $
+$NetBSD: distinfo,v 1.9 2015/11/03 23:33:29 agc Exp $

 SHA1 (R/sp_1.1-0.tar.gz) = da95e76d604aba5ae861ef92a9a5292355931f7d
 RMD160 (R/sp_1.1-0.tar.gz) = ae053b3e0ba0b92596f5406aafd17f019959b3e9
+SHA512 (R/sp_1.1-0.tar.gz) = 65e2b764d9511932f02ddbf573b458c0ac5ad706590186ba92497cb31ee26f0387a97e7a36d89ed9f41e7cbd3344817da44550e7b76440639afc176c13e27fd8
 Size (R/sp_1.1-0.tar.gz) = 1175034 bytes
--- a/math/R-spacetime/distinfo
+++ b/math/R-spacetime/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2015/05/31 02:32:48 wen Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:30 agc Exp $

 SHA1 (R/spacetime_1.1-4.tar.gz) = 495aaf322c6cc43d82292ac0fc093d14a1c02173
 RMD160 (R/spacetime_1.1-4.tar.gz) = 1a59a4e6e1e47c044e9456be7660e51d01c7c6f8
+SHA512 (R/spacetime_1.1-4.tar.gz) = ba6e185f4d506d5e734bb41dadc5bb1a779bf9bd7f00b9c4dfb8dd5ed780f3ec8f978ce019628266e9117665855c85244168ef14e068217e18ac4efed6f124f5
 Size (R/spacetime_1.1-4.tar.gz) = 3013768 bytes
--- a/math/R-splancs/distinfo
+++ b/math/R-splancs/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.4 2015/05/30 11:09:12 wen Exp $
+$NetBSD: distinfo,v 1.5 2015/11/03 23:33:30 agc Exp $

 SHA1 (R/splancs_2.01-37.tar.gz) = 9246939cb58af762c15940f8744d66591ed8adba
 RMD160 (R/splancs_2.01-37.tar.gz) = b54c39aa7603fc0d80c56a4aa93c4f4c3322510f
+SHA512 (R/splancs_2.01-37.tar.gz) = 8d34b0f4b9a4126652ff647b9d5f49ca7be8c581169d828a3de2d87cd1b4e01fa19f3463ecf38439ad75877079d28595a31f3991483a7d32b76755cdf2ff97dd
 Size (R/splancs_2.01-37.tar.gz) = 99050 bytes
--- a/math/R-statmod/Makefile
+++ b/math/R-statmod/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.11 2015/05/30 10:50:34 wen Exp $
+# $NetBSD: Makefile,v 1.12 2016/04/09 08:36:34 wen Exp $

 CATEGORIES=	math
 MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@ COMMENT=	Miscellaneous biostatistical modeling functions
 LICENSE=	gnu-lgpl-v2 OR gnu-lgpl-v3

 R_PKGNAME=	statmod
-R_PKGVER=	1.4.21
+R_PKGVER=	1.4.24

 USE_LANGUAGES+=	c fortran

--- a/math/R-statmod/distinfo
+++ b/math/R-statmod/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.9 2015/05/30 10:50:34 wen Exp $
+$NetBSD: distinfo,v 1.11 2016/04/09 08:36:34 wen Exp $

-SHA1 (R/statmod_1.4.21.tar.gz) = 0c1155621a5ae9e9e138200baf49f918fc937129
-RMD160 (R/statmod_1.4.21.tar.gz) = 2c4883ca782365eeae2415bc775ad92881fdccbc
-Size (R/statmod_1.4.21.tar.gz) = 56227 bytes
+SHA1 (R/statmod_1.4.24.tar.gz) = daf9656362f24b301127f47554b840be33547b18
+RMD160 (R/statmod_1.4.24.tar.gz) = 2f3e7f6a39e6ef42afe5d3c8e2156169a443213e
+SHA512 (R/statmod_1.4.24.tar.gz) = 1683f29b321e0c409b7de392f71ebb984ccd518bc2172b0c1a7e72c1b5aa95e30f99c0f4c940a266cd5bfbc004a191f032b93747072e3ce8b7de061b4f8005e9
+Size (R/statmod_1.4.24.tar.gz) = 57837 bytes
--- a/math/R-wle/distinfo
+++ b/math/R-wle/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.6 2014/03/09 14:22:53 wen Exp $
+$NetBSD: distinfo,v 1.7 2015/11/03 23:33:30 agc Exp $

 SHA1 (R/wle_0.9-9.tar.gz) = f86ef5d7d829801b8e3b381a218f22b170f9ffc2
 RMD160 (R/wle_0.9-9.tar.gz) = 793231bfb1b2080a8b9605b41057496d84df8464
+SHA512 (R/wle_0.9-9.tar.gz) = 45f20a9ebbd5df2f65fdcd3c987f43b3de0ebd3a4c9b00d44dd618fd25877c14f72fb4792f2eb6c22d6c5dad3ab0ec6e291e1ee5bfc76caee51b9798f4943716
 Size (R/wle_0.9-9.tar.gz) = 231935 bytes
--- a/math/R-xts/distinfo
+++ b/math/R-xts/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.5 2014/03/09 14:04:36 wen Exp $
+$NetBSD: distinfo,v 1.6 2015/11/03 23:33:30 agc Exp $

 SHA1 (R/xts_0.9-7.tar.gz) = c398c823ef2e31d5342954cc654424f05c97c52a
 RMD160 (R/xts_0.9-7.tar.gz) = d720cb3045f0dd7e824b782dafbdd06fc15d78f8
+SHA512 (R/xts_0.9-7.tar.gz) = b96e70899a75ed6802f65fb3bbe4f83fe741f33046b2ac039555bc37acbcbc052eceb7a3f4e2376c5a1674202841010cf44100af79a04ce5d028df49eb35a19f
 Size (R/xts_0.9-7.tar.gz) = 470815 bytes
--- a/math/R-zoo/distinfo
+++ b/math/R-zoo/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.7 2015/05/30 10:37:38 wen Exp $
+$NetBSD: distinfo,v 1.8 2015/11/03 23:33:30 agc Exp $

 SHA1 (R/zoo_1.7-12.tar.gz) = 73a7dc5152b21d4cd215c07a22f020b537c352c9
 RMD160 (R/zoo_1.7-12.tar.gz) = 82e1cb85247ec8b69c1af324fd4f2a5524a7a9c8
+SHA512 (R/zoo_1.7-12.tar.gz) = f2f742dbdca651c4b2285740afefabab8ebde5a355f2d8c86031437328a75e3005283d4e48506c06072be4a82a6904cfe90b43a1bbdc26327b6f5a2c381a0a4b
 Size (R/zoo_1.7-12.tar.gz) = 839181 bytes
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.162 2015/09/11 13:16:16 jperkin Exp $
+# $NetBSD: Makefile,v 1.168 2016/09/08 20:41:25 joerg Exp $

-DISTNAME=		R-3.2.2
+DISTNAME=		R-3.3.1
 CATEGORIES=		math
 MASTER_SITES=		${MASTER_SITE_R_CRAN:=base/R-3/}

@@ -69,6 +69,8 @@ CONFIGURE_ENV+=		r_cv_complete_blas=yes

 # Broken test for bzlib >= 1.0.5 in R 2.7.0
 CONFIGURE_ENV+=		r_cv_have_bzlib=yes
+# Override zlib 1.2.5 requirement
+CONFIGURE_ENV+=		r_cv_header_zlib_h=yes

 CONFIGURE_ENV+=		GETWD=${TOOLS_PWD_CMD}
 CONFIGURE_ENV+=		lt_cv_path_LD=${LD:Q}
@@ -85,11 +87,7 @@ CONFIGURE_ENV+=		LIBnn=lib
 # been installed SHAREMODE
 SHAREMODE=		644

-.include "../../mk/bsd.prefs.mk"
-
-.if ${OPSYS} == "Darwin"
-CONFIGURE_ARGS+=	--disable-openmp
-.endif
+CONFIGURE_ARGS.Darwin+=	--disable-openmp

 # R_PAPERSIZE can be: A4, Letter, Legal, Executive
 .if defined(PAPERSIZE)
@@ -132,8 +130,7 @@ SUBST_STAGE.fixwrap=	post-build
 SUBST_FILES.fixwrap=	libtool
 SUBST_SED.fixwrap=	-e "s,${WRAPPER_BINDIR}/libtool,${PKG_LIBTOOL},g"

-BUILDLINK_API_DEPENDS.zlib+= zlib>=1.2.3
-BUILDLINK_API_DEPENDS.bzip2+= bzip2>=1.0.5
+BUILDLINK_API_DEPENDS.bzip2+=	bzip2>=1.0.5

 .if ${OPSYS} == "NetBSD" && !empty(OS_VERSION:M1.[0-6]*)
 CONFIGURE_ARGS+=	--enable-mbcs=no
@@ -144,16 +141,10 @@ CONFIGURE_ARGS+=	--enable-mbcs=no
 .PHONY: fix-darwin-install-name
 post-install: fix-darwin-install-name
 fix-darwin-install-name:
-	install_name_tool -id ${PREFIX}/lib/R/lib/libR.dylib		\
-		${DESTDIR}${PREFIX}/lib/R/lib/libR.dylib
-	install_name_tool -id ${PREFIX}/lib/R/lib/libRlapack.dylib	\
-		${DESTDIR}${PREFIX}/lib/R/lib/libRlapack.dylib
 	${FIND} ${DESTDIR}${PREFIX} -name "*.so" | while read lib; do	\
 		libname=`basename $${lib}`;				\
 		libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`;	\
-		install_name_tool -id $${libdir}/$${libname}		\
-			-change libR.dylib				\
-			${PREFIX}/lib/R/lib/libR.dylib $${lib};		\
+		install_name_tool -id $${libdir}/$${libname} $${lib};	\
 	done
 .endif

@@ -170,6 +161,7 @@ fix-darwin-install-name:
 .include "../../graphics/png/buildlink3.mk"
 .include "../../graphics/tiff/buildlink3.mk"
 .include "../../math/blas/buildlink3.mk"
+.include "../../www/curl/buildlink3.mk"
 .include "../../x11/libXt/buildlink3.mk"
 .include "../../x11/tk/buildlink3.mk"

--- a/math/R/Makefile.extension
+++ b/math/R/Makefile.extension
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile.extension,v 1.19 2014/10/09 14:06:41 wiz Exp $
+# $NetBSD: Makefile.extension,v 1.20 2016/02/29 20:05:00 jperkin Exp $
 #
 # This Makefile fragment is included by packages for R library packages.
 #
@@ -26,6 +26,19 @@ do-install:
 	${PKGSRC_SETENV} ${INSTALL_ENV} ${MAKE_ENV} ${LOCALBASE}/bin/R \
 		CMD INSTALL ${R_PKG_INSTALL_ARGS} ${WRKDIR}/${R_PKGNAME}

+.include "../../mk/bsd.fast.prefs.mk"
+
+.if ${OPSYS} == "Darwin"
+.PHONY: fix-darwin-install-name
+post-install: fix-darwin-install-name
+fix-darwin-install-name:
+	${FIND} ${DESTDIR}${PREFIX} -name "*.so" | while read lib; do	\
+		libname=`basename $${lib}`;				\
+		libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`;	\
+		install_name_tool -id $${libdir}/$${libname} $${lib};	\
+	done
+.endif
+
 R_LIB=			lib/R/library
 R_INST_DIRS?=		${R_PKGNAME}
 R_HOMEPAGE_BASE=	http://cran.r-project.org/web/packages
--- a/math/R/PLIST
+++ b/math/R/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.23 2015/08/14 12:40:19 wen Exp $
+@comment $NetBSD: PLIST,v 1.25 2016/07/26 04:53:33 wen Exp $
 bin/R
 bin/Rscript
 info/R-FAQ.info.gz
@@ -54,6 +54,8 @@ lib/R/doc/THANKS
 lib/R/doc/html/NEWS.2.html
 lib/R/doc/html/NEWS.html
 lib/R/doc/html/R.css
+lib/R/doc/html/Rlogo.pdf
+lib/R/doc/html/Rlogo.svg
 lib/R/doc/html/Search.html
 lib/R/doc/html/SearchOn.html
 lib/R/doc/html/about.html
@@ -61,7 +63,6 @@ lib/R/doc/html/favicon.ico
 lib/R/doc/html/index.html
 lib/R/doc/html/left.jpg
 lib/R/doc/html/logo.jpg
-lib/R/doc/html/logosm.jpg
 lib/R/doc/html/packages-head-utf8.html
 lib/R/doc/html/resources.html
 lib/R/doc/html/right.jpg
@@ -203,6 +204,7 @@ lib/R/library/Matrix/Copyrights
 lib/R/library/Matrix/DESCRIPTION
 lib/R/library/Matrix/Doxyfile
 lib/R/library/Matrix/INDEX
+lib/R/library/Matrix/LICENCE
 lib/R/library/Matrix/Meta/Rd.rds
 lib/R/library/Matrix/Meta/data.rds
 lib/R/library/Matrix/Meta/hsearch.rds
@@ -767,6 +769,7 @@ lib/R/library/mgcv/po/pl/LC_MESSAGES/mgcv.mo
 lib/R/library/nlme/CITATION
 lib/R/library/nlme/DESCRIPTION
 lib/R/library/nlme/INDEX
+lib/R/library/nlme/LICENCE
 lib/R/library/nlme/Meta/Rd.rds
 lib/R/library/nlme/Meta/data.rds
 lib/R/library/nlme/Meta/hsearch.rds
@@ -808,6 +811,7 @@ lib/R/library/nlme/scripts/ch04.R
 lib/R/library/nlme/scripts/ch05.R
 lib/R/library/nlme/scripts/ch06.R
 lib/R/library/nlme/scripts/ch08.R
+lib/R/library/nlme/scripts/runme.R
 lib/R/library/nlme/scripts/sims.rda
 lib/R/library/nnet/CITATION
 lib/R/library/nnet/DESCRIPTION
@@ -1026,7 +1030,6 @@ lib/R/library/survival/Meta/package.rds
 lib/R/library/survival/Meta/vignette.rds
 lib/R/library/survival/NAMESPACE
 lib/R/library/survival/NEWS.Rd
-lib/R/library/survival/NEWS.Rd.orig
 lib/R/library/survival/R/survival
 lib/R/library/survival/R/survival.rdb
 lib/R/library/survival/R/survival.rdx
@@ -1050,6 +1053,8 @@ lib/R/library/survival/doc/tests.pdf
 lib/R/library/survival/doc/timedep.R
 lib/R/library/survival/doc/timedep.Rnw
 lib/R/library/survival/doc/timedep.pdf
+lib/R/library/survival/doc/validate.R
+lib/R/library/survival/doc/validate.Rnw
 lib/R/library/survival/doc/validate.pdf
 lib/R/library/survival/help/AnIndex
 lib/R/library/survival/help/aliases.rds
@@ -1404,6 +1409,8 @@ lib/R/library/utils/Meta/links.rds
 lib/R/library/utils/Meta/nsInfo.rds
 lib/R/library/utils/Meta/package.rds
 lib/R/library/utils/NAMESPACE
+lib/R/library/utils/R/sysdata.rdb
+lib/R/library/utils/R/sysdata.rdx
 lib/R/library/utils/R/utils
 lib/R/library/utils/R/utils.rdb
 lib/R/library/utils/R/utils.rdx
--- a/math/R/PLIST.Darwin
+++ b/math/R/PLIST.Darwin
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST.Darwin,v 1.2 2015/09/01 06:14:36 dbj Exp $
+@comment $NetBSD: PLIST.Darwin,v 1.4 2016/08/15 09:36:31 jperkin Exp $
@comment 
@comment The configure script has explicit check for darwin and sets
@comment   --with-internal-tzcode=yes
@@ -123,6 +123,7 @@ lib/R/share/zoneinfo/America/Edmonton
 lib/R/share/zoneinfo/America/Eirunepe
 lib/R/share/zoneinfo/America/El_Salvador
 lib/R/share/zoneinfo/America/Ensenada
+lib/R/share/zoneinfo/America/Fort_Nelson
 lib/R/share/zoneinfo/America/Fort_Wayne
 lib/R/share/zoneinfo/America/Fortaleza
 lib/R/share/zoneinfo/America/Glace_Bay
@@ -255,6 +256,7 @@ lib/R/share/zoneinfo/Asia/Baghdad
 lib/R/share/zoneinfo/Asia/Bahrain
 lib/R/share/zoneinfo/Asia/Baku
 lib/R/share/zoneinfo/Asia/Bangkok
+lib/R/share/zoneinfo/Asia/Barnaul
 lib/R/share/zoneinfo/Asia/Beirut
 lib/R/share/zoneinfo/Asia/Bishkek
 lib/R/share/zoneinfo/Asia/Brunei
@@ -326,6 +328,7 @@ lib/R/share/zoneinfo/Asia/Tel_Aviv
 lib/R/share/zoneinfo/Asia/Thimbu
 lib/R/share/zoneinfo/Asia/Thimphu
 lib/R/share/zoneinfo/Asia/Tokyo
+lib/R/share/zoneinfo/Asia/Tomsk
 lib/R/share/zoneinfo/Asia/Ujung_Pandang
 lib/R/share/zoneinfo/Asia/Ulaanbaatar
 lib/R/share/zoneinfo/Asia/Ulan_Bator
@@ -431,6 +434,7 @@ lib/R/share/zoneinfo/Etc/Universal
 lib/R/share/zoneinfo/Etc/Zulu
 lib/R/share/zoneinfo/Europe/Amsterdam
 lib/R/share/zoneinfo/Europe/Andorra
+lib/R/share/zoneinfo/Europe/Astrakhan
 lib/R/share/zoneinfo/Europe/Athens
 lib/R/share/zoneinfo/Europe/Belfast
 lib/R/share/zoneinfo/Europe/Belgrade
@@ -451,6 +455,7 @@ lib/R/share/zoneinfo/Europe/Istanbul
 lib/R/share/zoneinfo/Europe/Jersey
 lib/R/share/zoneinfo/Europe/Kaliningrad
 lib/R/share/zoneinfo/Europe/Kiev
+lib/R/share/zoneinfo/Europe/Kirov
 lib/R/share/zoneinfo/Europe/Lisbon
 lib/R/share/zoneinfo/Europe/Ljubljana
 lib/R/share/zoneinfo/Europe/London
@@ -478,6 +483,7 @@ lib/R/share/zoneinfo/Europe/Stockholm
 lib/R/share/zoneinfo/Europe/Tallinn
 lib/R/share/zoneinfo/Europe/Tirane
 lib/R/share/zoneinfo/Europe/Tiraspol
+lib/R/share/zoneinfo/Europe/Ulyanovsk
 lib/R/share/zoneinfo/Europe/Uzhgorod
 lib/R/share/zoneinfo/Europe/Vaduz
 lib/R/share/zoneinfo/Europe/Vatican
--- a/math/R/buildlink3.mk
+++ b/math/R/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.9 2010/02/09 07:02:53 adam Exp $
+# $NetBSD: buildlink3.mk,v 1.10 2016/02/29 20:00:44 jperkin Exp $

 BUILDLINK_TREE+=	R

@@ -10,4 +10,6 @@ BUILDLINK_ABI_DEPENDS.R+=	R>=2.2.1nb2
 BUILDLINK_PKGSRCDIR.R?=	../../math/R
 .endif # R_BUILDLINK3_MK

+.include "../../devel/gettext-lib/buildlink3.mk"
+
 BUILDLINK_TREE+=	-R
--- a/Show More
+++ b/Show More