Import of pkgsrc-2016Q3

parallel/clusterit/distinfo

@@ -1,12 +1,13 @@
-$NetBSD: distinfo,v 1.15 2013/12/17 06:45:40 asau Exp $
+$NetBSD: distinfo,v 1.17 2015/12/29 04:04:30 dholland Exp $
 
 SHA1 (clusterit-2.5.tar.gz) = 65d36116665179dd16029ac53182fde92d868020
 RMD160 (clusterit-2.5.tar.gz) = b08f7903bc90375e45a733ef843df3e9bf216bb7
+SHA512 (clusterit-2.5.tar.gz) = 7efb0aa55c9581151ec73405d4e69df2d4258ee4c6b254a29bab95a7b90c4d645387db0d7c884eda6d7a861ce25bea27136df4af1990e5401a1b2a3d035999fc
 Size (clusterit-2.5.tar.gz) = 295347 bytes
 SHA1 (patch-aa) = 15b4db813a8cb91b2c2ac277297fe4394637e804
 SHA1 (patch-ab) = 32a8efdbf45226a7ec1a7a190ff7fae9e2bfe2ae
-SHA1 (patch-ac) = d3c66a9f8e48fbc0e3471de71d91b7601400f74b
-SHA1 (patch-ad) = 01935f2e2e2d308a148c26186e04912ad6c8d88d
+SHA1 (patch-ac) = 50662b361c2ff1a9dee78a12fe019f16f6d8ad84
+SHA1 (patch-ad) = d4f13798c351d3fc445715d4ad4c2d76f8ec4cff
 SHA1 (patch-ae) = 3956e89d1e0b35bbb83db74879f1ce03f70a99ad
 SHA1 (patch-af) = d699f909af6af13b492e21907cdb4216664b9169
 SHA1 (patch-rvt_ttyinit.c) = 00f433d7ca7da0819a38abcf9fe687913e231109

parallel/clusterit/patches/patch-ac

@@ -1,3 +1,7 @@
+$NetBSD: patch-ac,v 1.3 2015/12/29 04:04:30 dholland Exp $
+
+Don't declare own errno.
+
 --- dsh/run.c.orig	2008-02-27 12:29:38.000000000 -0700
 +++ dsh/run.c	2008-02-27 14:49:30.000000000 -0700
 @@ -48,5 +48,4 @@

parallel/clusterit/patches/patch-ad

@@ -1,3 +1,7 @@
+$NetBSD: patch-ad,v 1.3 2015/12/29 04:04:30 dholland Exp $
+
+Don't declare own errno.
+
 --- pcp/pcp.c.orig	2008-02-27 12:29:47.000000000 -0700
 +++ pcp/pcp.c	2008-02-27 14:49:30.000000000 -0700
 @@ -51,5 +51,4 @@

parallel/dqs/distinfo

@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.10 2014/01/17 02:33:20 asau Exp $
+$NetBSD: distinfo,v 1.11 2015/11/02 23:46:12 agc Exp $
 
 SHA1 (DQS-3.3.2.tgz) = fbb165cc058dcbda8bcfa6dbead78e2f1a4f031e
 RMD160 (DQS-3.3.2.tgz) = eb32ef1cd8243b508fbee91710982637de185b7a
+SHA512 (DQS-3.3.2.tgz) = 92ce8a6160a7b1d07477b3e71d35296f32acbe25254c244a4562b86712f148addfcc827088b522979cdbc03dba6eb7e5436819d3a6975e6dc4136d1804a3175a
 Size (DQS-3.3.2.tgz) = 1498996 bytes
 SHA1 (patch-SRC_dqs__parse.c) = d25940416e918238a034ac7a663d1ce1fed743fb
 SHA1 (patch-SRC_dqs__parse__qconf.c) = 7446f326d433a70c81ee9521e9f69cbb89451f78

parallel/dsh/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.2 2014/01/22 06:21:30 cheusov Exp $
+$NetBSD: distinfo,v 1.3 2015/11/02 23:46:12 agc Exp $
 
 SHA1 (dsh-0.25.10.tar.gz) = 79ac887a85f8cc8a654a8aa94cb05b5c8c9394de
 RMD160 (dsh-0.25.10.tar.gz) = 2a60c27f8c0b7d4546f3cf96b37aaa01cbd0579c
+SHA512 (dsh-0.25.10.tar.gz) = a53fba14e65644ce5858b1e9827601016db6d61cb50b0229ea53eeaee676f5870d2dbfd6ebde237008bfc7144316484529c646104e72d99868d44d814a41a009
 Size (dsh-0.25.10.tar.gz) = 394506 bytes

parallel/ganglia-monitor-core/Makefile

@@ -1,52 +1,77 @@
-# $NetBSD: Makefile,v 1.53 2015/04/25 14:24:44 tnn Exp $
+# $NetBSD: Makefile,v 1.54 2016/02/16 12:48:18 fhajny Exp $
 #
 
-DISTNAME=		ganglia-3.1.2
-PKGNAME=		ganglia-monitor-core-3.1.2
-PKGREVISION=		25
+DISTNAME=		ganglia-3.7.2
+PKGNAME=		ganglia-monitor-core-3.7.2
 CATEGORIES=		net parallel
 MASTER_SITES=		${MASTER_SITE_SOURCEFORGE:=ganglia/}
 
 MAINTAINER=		pkgsrc-users@NetBSD.org
 HOMEPAGE=		http://ganglia.sourceforge.net/
 COMMENT=		Ganglia cluster monitor, monitoring daemon
+LICENSE=		modified-bsd
 
 GNU_CONFIGURE=		yes
 SET_LIBDIR=		yes
 
-CONFIGURE_ARGS+=	--with-gmetad
 USE_LIBTOOL=		yes
-USE_LANGUAGES+=		c c++ c99
+USE_LANGUAGES=		c c99
+USE_TOOLS+=		pkg-config
 
 PLIST_VARS+=		python
 
 PKG_OPTIONS_VAR=	PKG_OPTIONS.ganglia
 PKG_SUPPORTED_OPTIONS=	python		# Gmond support for python modules
 
+.include "../../mk/bsd.prefs.mk"
+
+CONFIGURE_ARGS+=	--with-gmetad
+CONFIGURE_ARGS+=	--enable-setuid=${GANGLIA_USER}
+CONFIGURE_ARGS+=	--enable-setgid=${GANGLIA_GROUP}
+
 .include "../../mk/bsd.options.mk"
 
 .if !empty(PKG_OPTIONS:Mpython)
 CONFIGURE_ARGS+=	--with-python=${PYTHONBIN}
 PLIST.python=		yes
+CONF_FILES+=		${EGDIR}/conf.d/modpython.conf \
+			${PKG_SYSCONFDIR}/gmond.conf.d/modpython.conf
 .include "../../lang/python/application.mk"
 .else
 CONFIGURE_ARGS+=	--disable-python
 .endif
 
-SUBST_CLASSES+=		pkg_sysconfdir
-SUBST_STAGE.pkg_sysconfdir=	pre-configure
-SUBST_MESSAGE.pkg_sysconfdir=	Fixing PKG_SYSCONFDIR
-SUBST_FILES.pkg_sysconfdir=	ganglia.html				\
-				gmetad/cmdline.c gmetad/cmdline.h	\
-				gmetric/cmdline.c gmetric/cmdline.h	\
-				gmond/cmdline.c gmond/cmdline.h		\
-				gmond/g25_config.h gmond/gmond.conf.5	\
-				gmond/modules/conf.d/modpython.conf	\
-				gmond/modules/conf.d/modpython.conf.in	\
-				gmond/modules/python/README.in		\
-				mans/gmetad.1 mans/gmetric.1 mans/gmond.1
-SUBST_SED.pkg_sysconfdir+=	-e 's,/etc/ganglia,${PKG_SYSCONFDIR},g'
-SUBST_SED.pkg_sysconfdir+=	-e 's,/usr/lib/ganglia,${PREFIX}/lib/ganglia,g'
+GANGLIA_USER?=			ganglia
+GANGLIA_GROUP?=			${GANGLIA_USER}
+GANGLIA_VARBASE?=		${VARBASE}/db
+
+PKG_GROUPS+=			${GANGLIA_GROUP}
+PKG_USERS+=			${GANGLIA_USER}:${GANGLIA_GROUP}
+PKG_GECOS.${GANGLIA_USER}=	Ganglia daemon user
+PKG_HOME.${GANGLIA_USER}=	${GANGLIA_VARBASE}/ganglia
+
+OWN_DIRS_PERMS+=		${GANGLIA_VARBASE}/ganglia ${GANGLIA_USER} ${GANGLIA_GROUP} 0755
+OWN_DIRS_PERMS+=		${GANGLIA_VARBASE}/ganglia/rrds ${GANGLIA_USER} ${GANGLIA_GROUP} 0755
+
+INSTALL_MAKE_FLAGS+=	sysconfdir=${EGDIR}
+
+SUBST_CLASSES+=		paths
+SUBST_STAGE.paths=	pre-configure
+SUBST_MESSAGE.paths=	Fixing default paths
+SUBST_FILES.paths=	configure ganglia.html			\
+			gmetad/cmdline.c gmetad/cmdline.h	\
+			gmetric/cmdline.c gmetric/cmdline.h	\
+			gmond/cmdline.c gmond/cmdline.h		\
+			gmond/g25_config.h gmond/gmond.conf.5	\
+			gmond/modules/conf.d/modpython.conf	\
+			gmond/modules/conf.d/modpython.conf.in	\
+			gmond/modules/python/README.in		\
+			mans/gmetad.1 mans/gmetric.1 mans/gmond.1
+SUBST_SED.paths+=	-e 's,/etc/ganglia,${PKG_SYSCONFDIR},g'
+SUBST_SED.paths+=	-e 's,/usr/lib/ganglia,${PREFIX}/lib/ganglia,g'
+SUBST_VARS.paths+=	GANGLIA_VARBASE
+
+FILES_SUBST+=		GANGLIA_VARBASE=${GANGLIA_VARBASE}
 
 DOCDIR=			${PREFIX}/share/doc/ganglia
 EGDIR=			${PREFIX}/share/examples/ganglia
@@ -54,23 +79,20 @@ CONF_FILES=		${EGDIR}/gmond.conf ${PKG_SYSCONFDIR}/gmond.conf
 CONF_FILES+=		${EGDIR}/gmetad.conf ${PKG_SYSCONFDIR}/gmetad.conf
 
 RCD_SCRIPTS=		gmond gmetad
+SMF_NAME=		ganglia
+SMF_INSTANCES=		${RCD_SCRIPTS}
 
 INSTALLATION_DIRS=	${DOCDIR} ${EGDIR} ${PKGMANDIR}/man1 ${PKGMANDIR}/man5
 
 post-install:
-	${INSTALL_MAN} ${WRKSRC}/mans/gmetad.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1/
-	${INSTALL_MAN} ${WRKSRC}/mans/gmetric.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1/
-	${INSTALL_MAN} ${WRKSRC}/mans/gmond.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1/
-	${INSTALL_MAN} ${WRKSRC}/mans/gstat.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1/
-	${INSTALL_MAN} ${WRKSRC}/gmond/gmond.conf.5 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man5/
-	${INSTALL_DATA} ${WRKSRC}/gmetad/gmetad.conf ${DESTDIR}${EGDIR}/
 	${WRKSRC}/gmond/gmond -t > ${DESTDIR}${EGDIR}/gmond.conf
 	${INSTALL_DATA} ${WRKSRC}/gmond/modules/python/README ${DESTDIR}${DOCDIR}/
 
 .include "../../databases/rrdtool/buildlink3.mk"
 .include "../../devel/apr/buildlink3.mk"
 .include "../../devel/confuse/buildlink3.mk"
-.include "../../mk/pthread.buildlink3.mk"
+.include "../../devel/pcre/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
 .include "../../textproc/expat/buildlink3.mk"
-
+.include "../../mk/pthread.buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"

parallel/ganglia-monitor-core/PLIST

@@ -1,9 +1,10 @@
-@comment $NetBSD: PLIST,v 1.6 2014/03/11 14:05:12 jperkin Exp $
+@comment $NetBSD: PLIST,v 1.7 2016/02/16 12:48:18 fhajny Exp $
 bin/ganglia-config
 bin/gmetric
 bin/gstat
 include/ganglia.h
 include/ganglia_gexec.h
+include/gm_file.h
 include/gm_metric.h
 include/gm_mmn.h
 include/gm_msg.h
@@ -20,6 +21,7 @@ ${PLIST.python}lib/ganglia/modpython.so
 lib/ganglia/modsys.so
 lib/libganglia.la
 man/man1/gmetad.1
+man/man1/gmetad.py.1
 man/man1/gmetric.1
 man/man1/gmond.1
 man/man1/gstat.1
@@ -29,3 +31,4 @@ sbin/gmond
 share/doc/ganglia/README
 share/examples/ganglia/gmetad.conf
 share/examples/ganglia/gmond.conf
+${PLIST.python}share/examples/ganglia/conf.d/modpython.conf

parallel/ganglia-monitor-core/distinfo

@@ -1,9 +1,18 @@
-$NetBSD: distinfo,v 1.12 2013/02/26 11:01:32 joerg Exp $
+$NetBSD: distinfo,v 1.14 2016/02/16 12:48:18 fhajny Exp $
 
-SHA1 (ganglia-3.1.2.tar.gz) = be5db246eb755d8c450140d1c80afef4f1179fe1
-RMD160 (ganglia-3.1.2.tar.gz) = 1f78cf1019759e12c3c65901fd74ac65dfddf4e3
-Size (ganglia-3.1.2.tar.gz) = 1213196 bytes
-SHA1 (patch-aa) = e258e4efb1ae012db51901de87e614cede78812c
-SHA1 (patch-ab) = 260a78711c2c7f1111ce8c4b0d54d2edd60dde08
-SHA1 (patch-ac) = a7d4251eed047cb6ffb89c23d87b0db1dbe7b5f4
+SHA1 (ganglia-3.7.2.tar.gz) = 5ea23da8e5b85da53216dd7c742c8154e7aa576e
+RMD160 (ganglia-3.7.2.tar.gz) = 9b5c48bcf2aa489caea689713dabb12804d9cee2
+SHA512 (ganglia-3.7.2.tar.gz) = a88955e59421a447e5752a9bfe5f599d989a7a5a0141141ab3601d1ab250be4eebbede8bcef8baa151b2f9deaf3f56e30aef8ea709f3cc820a79fa3d3961e0df
+Size (ganglia-3.7.2.tar.gz) = 1302320 bytes
+SHA1 (patch-ac) = 5b9aaa5c8d5cb194e8c467e6e56ff5e235de7c69
+SHA1 (patch-configure) = d8f096263a8b2f04e30d4a053b4636ac5d1cd95f
+SHA1 (patch-gmetad_conf.c.in) = 75aa2d0c5d8af8a2864f7225444f1f263df4a60b
+SHA1 (patch-gmetad_data__thread.c) = 8dedb930e54872dab97d659f7d911a540171dbfd
+SHA1 (patch-gmetad_rrd__helpers.c) = 643c359f461e9616b547b276281bcc9a39a77a28
+SHA1 (patch-gmond_gmond.conf.5) = dfabfee6fb26cd5a384c1baed48fe631b957cf5b
+SHA1 (patch-gmond_modules_conf.d_modpython.conf.in) = 5b0d79efb34dae2f46dd911509759e8d75b4af96
 SHA1 (patch-lib__gm_protocol_dr.c) = 9d17d79bb1a6426a2547c00006819483aff47363
+SHA1 (patch-lib__update_pidfile.c) = a8ed4fbeabf5d46a523c5cd3b891e5752d74187b
+SHA1 (patch-lib_default__conf.h.in) = 70dbcbc39226369c9fb4f59240b8568854ac4e87
+SHA1 (patch-libmetrics__solaris__metrics.c) = 2b6ad945ed7eafa05fe4c24a535b00deba46173d
+SHA1 (patch-libmetrics_freebsd_metrics.c) = acb3485a603c13fd4a9f7d7af621988f777ede6e

parallel/ganglia-monitor-core/files/smf/manifest.xml

@@ -0,0 +1,41 @@
+<?xml version="1.0"?>
+<!DOCTYPE service_bundle SYSTEM "/usr/share/lib/xml/dtd/service_bundle.dtd.1">
+<service_bundle type="manifest" name="export">
+  <service name="@SMF_PREFIX@/ganglia" type="service" version="1">
+    <dependency name="network" grouping="require_all" restart_on="error" type="service">
+      <service_fmri value="svc:/milestone/network:default" />
+    </dependency>
+    <dependency name="filesystem" grouping="require_all" restart_on="error" type="service">
+      <service_fmri value="svc:/system/filesystem/local" />
+    </dependency>
+    <method_context working_directory="@GANGLIA_VARBASE@/ganglia" />
+    <property_group name="startd" type="framework">
+      <propval name="duration" type="astring" value="contract" />
+      <propval name="ignore_error" type="astring" value="core,signal" />
+    </property_group>
+    <instance name="gmetad" enabled="false">
+      <exec_method type="method" name="start" exec="@PREFIX@/sbin/gmetad" timeout_seconds="60" />
+      <exec_method type="method" name="stop" exec=":kill" timeout_seconds="60" />
+      <property_group name="application" type="application">
+        <propval name="config_file" type="astring" value="@PKG_SYSCONFDIR@/gmetad.conf" />
+      </property_group>
+      <template>
+        <common_name>
+          <loctext xml:lang="C">Ganglia Meta Daemon</loctext>
+        </common_name>
+      </template>
+    </instance>
+    <instance name="gmond" enabled="false">
+      <exec_method type="method" name="start" exec="@PREFIX@/sbin/gmond" timeout_seconds="60" />
+      <exec_method type="method" name="stop" exec=":kill" timeout_seconds="60" />
+      <property_group name="application" type="application">
+        <propval name="config_file" type="astring" value="@PKG_SYSCONFDIR@/gmond.conf" />
+      </property_group>
+      <template>
+        <common_name>
+          <loctext xml:lang="C">Ganglia Monitoring Daemon</loctext>
+        </common_name>
+      </template>
+    </instance>
+  </service>
+</service_bundle>

parallel/ganglia-monitor-core/patches/patch-aa

@@ -1,13 +0,0 @@
-$NetBSD: patch-aa,v 1.4 2009/11/10 14:55:18 brook Exp $
-
---- gmetad/conf.c.orig	2009-01-28 16:23:20.000000000 -0700
-+++ gmetad/conf.c
-@@ -265,7 +265,7 @@ set_defaults (gmetad_config_t *config)
-    config->debug_level = 0;
-    config->should_setuid = 1;
-    config->setuid_username = "nobody";
--   config->rrd_rootdir = "/var/lib/ganglia/rrds";
-+   config->rrd_rootdir = "/var/db/ganglia/rrds";
-    config->scalable_mode = 1;
-    config->all_trusted = 0;
-    config->num_RRAs = 5;

parallel/ganglia-monitor-core/patches/patch-ab

@@ -1,11 +0,0 @@
-$NetBSD: patch-ab,v 1.5 2009/11/10 14:55:18 brook Exp $
-
---- gmetad/gmetad.conf.orig	2009-01-28 16:23:20.000000000 -0700
-+++ gmetad/gmetad.conf
-@@ -110,5 +110,5 @@ data_source "my cluster" localhost
- #
- #-------------------------------------------------------------------------------
- # Where gmetad stores its round-robin databases
--# default: "/var/lib/ganglia/rrds"
-+# default: "/var/db/ganglia/rrds"
- # rrd_rootdir "/some/other/place"

parallel/ganglia-monitor-core/patches/patch-ac

@@ -1,4 +1,4 @@
-$NetBSD: patch-ac,v 1.5 2013/02/26 11:01:32 joerg Exp $
+$NetBSD: patch-ac,v 1.6 2016/02/16 12:48:18 fhajny Exp $
 
 First chunk: update sysctl name for changes in NetBSD.
 
@@ -12,7 +12,7 @@ also changed proc_run_func somewhat to only count actually running
 processes (having a look at NetBSD's ps(1) implementation) - without the
 change, I got around 30 running processes on an idle machine.
 
---- libmetrics/netbsd/metrics.c.orig	2009-01-28 23:23:20.000000000 +0000
+--- libmetrics/netbsd/metrics.c.orig	2015-07-01 19:49:35.000000000 +0000
 +++ libmetrics/netbsd/metrics.c
 @@ -9,10 +9,15 @@
   *  Tested on NetBSD 2.0.2 (i386)
@@ -42,7 +42,7 @@ change, I got around 30 running processes on an idle machine.
     if (sysctlbyname("machdep.est.frequency.target", &cpu_speed, &len, NULL, 0) == -1)
        val.uint32 = 0;
  #endif
-@@ -559,44 +567,40 @@ proc_total_func ( void )
+@@ -559,49 +567,56 @@ proc_total_func ( void )
  g_val_t
  proc_run_func( void )
  {
@@ -111,16 +111,33 @@ change, I got around 30 running processes on an idle machine.
  
  output:
     return val;
-@@ -1135,36 +1139,41 @@ get_netbw(double *in_bytes, double *out_
+ }
+ 
++/*
++** FIXME - This metric is not valid on NetBSD
++*/
++g_val_t
++cpu_steal_func ( void )
++{
++	static g_val_t val;
++	val.f = 0.0;
++	return val;
++}
++
+ g_val_t
+ mem_free_func ( void )
+ {
+@@ -1135,36 +1150,41 @@ get_netbw(double *in_bytes, double *out_
  
  	next = buf;
  	while (next < lim) {
 +		struct if_msghdr tmp;
  
  		ifm = (struct if_msghdr *)next;
-+		memcpy(&tmp, ifm, sizeof(tmp));
- 		
+-		
 -		if (ifm->ifm_type == RTM_IFINFO) {
++	 	memcpy(&tmp, ifm, sizeof(tmp));
++	
 +		if (tmp.ifm_type == RTM_IFINFO) {
  			sdl = (struct sockaddr_dl *)(ifm + 1);
  		} else {
@@ -132,7 +149,7 @@ change, I got around 30 running processes on an idle machine.
 +			fprintf(stderr, "msglen = %d\n", tmp.ifm_msglen);
  			fprintf(stderr, "buf:%p, next:%p, lim:%p\n", buf, next,
  				lim);
- 			exit (1);
+ 			goto output;
  		}
  
 -		next += ifm->ifm_msglen;
@@ -145,9 +162,9 @@ change, I got around 30 running processes on an idle machine.
  				break;
  
 -			next += nextifm->ifm_msglen;
-+			memcpy(&msglen, &nextifm->ifm_msglen,
-+					sizeof(nextifm->ifm_msglen));
-+			next += msglen;
++                        memcpy(&msglen, &nextifm->ifm_msglen,
++                                        sizeof(nextifm->ifm_msglen));
++                        next += msglen;
  		}
  
 -		if ((ifm->ifm_flags & IFF_LOOPBACK) || 
@@ -161,7 +178,7 @@ change, I got around 30 running processes on an idle machine.
  
  		/* If we don't have a previous value yet, make a slot. */
  		if (index >= indexes) {
-@@ -1187,25 +1196,25 @@ get_netbw(double *in_bytes, double *out_
+@@ -1187,25 +1207,25 @@ get_netbw(double *in_bytes, double *out_
  		 */
  		if (!seen[index]) {
  			seen[index] = 1;

parallel/ganglia-monitor-core/patches/patch-configure

@@ -0,0 +1,89 @@
+$NetBSD: patch-configure,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+- Portability.
+- Make local storage dir consistent.
+- Fix C99 handling on SunOS.
+
+--- configure.orig	2015-07-01 19:49:35.000000000 +0000
++++ configure
+@@ -12844,7 +12844,7 @@ if test "${with_memcached+set}" = set; t
+ fi
+ 
+ 
+-if test x"$memcache" == xyes; then
++if test x"$memcache" = xyes; then
+ 
+ pkg_failed=no
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for DEPS" >&5
+@@ -12948,7 +12948,7 @@ if test "${with_riemann+set}" = set; the
+ fi
+ 
+ 
+-if test x"$with_riemann" == xyes; then
++if test x"$with_riemann" = xyes; then
+ echo
+ echo Checking for Protocol Buffers
+ 
+@@ -13368,7 +13368,7 @@ if test x"$libpcrepath" != x && test x"$
+   echo "Added -I$libpcrepath/include to CFLAGS"
+   echo "Added -L$libpcrepath/${LIB_SUFFIX} to LDFLAGS"
+ fi
+-if test x"$libpcre" == xyes ; then
++if test x"$libpcre" = xyes ; then
+   for ac_header in pcre/pcre.h pcre.h
+ do :
+   as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+@@ -15779,7 +15779,7 @@ fi
+ rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ 
+ 
+-varstatedir="/var/lib"
++varstatedir="@GANGLIA_VARBASE@"
+ 
+ # Used when static linking requested
+ EXPORT_SYMBOLS="-export-dynamic"
+@@ -15901,11 +15901,7 @@ $as_echo "#define DARWIN 1" >>confdefs.h
+ $as_echo "#define SUPPORT_GEXEC 0" >>confdefs.h
+ 
+ 		CFLAGS="$CFLAGS -D__EXTENSIONS__ -DHAVE_STRERROR"
+-		if test x"$ac_cv_prog_cc_c99" = x -o x"$ac_cv_prog_cc_c99" = xno; then
+-		   CFLAGS="$CFLAGS -D_POSIX_C_SOURCE=199506L"
+-		else
+-		   CFLAGS="$CFLAGS -D_POSIX_C_SOURCE=200112L"
+-		fi
++		CFLAGS="$CFLAGS -D_POSIX_C_SOURCE=200112L"
+ 		if test x"$ac_cv_c_compiler_gnu" != xyes; then
+ 		   LIBS="-lm $LIBS"
+ 		fi
+@@ -15917,7 +15913,6 @@ $as_echo "#define SOLARIS 1" >>confdefs.
+ 
+ $as_echo "#define SUPPORT_GEXEC 0" >>confdefs.h
+ 
+-		varstatedir="/var/db"
+ 		osreldate=`awk '/^\#define[[:space:]]*__FreeBSD_version/ { print $3 }' /usr/include/osreldate.h`
+ 		if test $osreldate -lt 502102; then
+ 		   CFLAGS="-pthread $CFLAGS -D_REENTRANT"
+@@ -15930,7 +15925,6 @@ $as_echo "#define FREEBSD 1" >>confdefs.
+ 
+ $as_echo "#define SUPPORT_GEXEC 0" >>confdefs.h
+ 
+-		varstatedir="/var/db"
+ 
+ $as_echo "#define DRAGONFLYBSD 1" >>confdefs.h
+ 
+@@ -15938,7 +15932,6 @@ $as_echo "#define DRAGONFLYBSD 1" >>conf
+ *netbsd*)
+ $as_echo "#define SUPPORT_GEXEC 0" >>confdefs.h
+ 
+-		varstatedir="/var/db"
+ 
+ $as_echo "#define NETBSD 1" >>confdefs.h
+ 
+@@ -15946,7 +15939,6 @@ $as_echo "#define NETBSD 1" >>confdefs.h
+ *openbsd*)
+ $as_echo "#define SUPPORT_GEXEC 0" >>confdefs.h
+ 
+-		varstatedir="/var/db"
+ 
+ $as_echo "#define OPENBSD 1" >>confdefs.h
+ 

parallel/ganglia-monitor-core/patches/patch-gmetad_conf.c.in

@@ -0,0 +1,15 @@
+$NetBSD: patch-gmetad_conf.c.in,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Use setuid user from configure.
+
+--- gmetad/conf.c.in.orig	2015-07-01 19:49:35.000000000 +0000
++++ gmetad/conf.c.in
+@@ -475,7 +475,7 @@ set_defaults (gmetad_config_t *config)
+    config->trusted_hosts = NULL;
+    config->debug_level = 0;
+    config->should_setuid = 1;
+-   config->setuid_username = "nobody";
++   config->setuid_username = SETUID_USER;
+    config->rrd_rootdir = "@varstatedir@/ganglia/rrds";
+    config->rrdcached_addrstr = NULL;
+    memset(&config->rrdcached_address, 0, sizeof (config->rrdcached_address));

parallel/ganglia-monitor-core/patches/patch-gmetad_data__thread.c

@@ -0,0 +1,14 @@
+$NetBSD: patch-gmetad_data__thread.c,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Portability.
+
+--- gmetad/data_thread.c.orig	2015-07-01 19:49:35.000000000 +0000
++++ gmetad/data_thread.c
+@@ -1,6 +1,7 @@
+ #include <stdio.h>
+ #include <stdlib.h>
+ #include <unistd.h>
++#include <sys/filio.h>
+ #include <sys/ioctl.h>
+ #include <sys/poll.h>
+ #include <sys/time.h>

parallel/ganglia-monitor-core/patches/patch-gmetad_rrd__helpers.c

@@ -0,0 +1,14 @@
+$NetBSD: patch-gmetad_rrd__helpers.c,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Portability.
+
+--- gmetad/rrd_helpers.c.orig	2015-07-01 19:49:35.000000000 +0000
++++ gmetad/rrd_helpers.c
+@@ -2,6 +2,7 @@
+ #include <stdio.h>
+ #include <stdlib.h>
+ #include <string.h>
++#include <sys/filio.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <unistd.h>

parallel/ganglia-monitor-core/patches/patch-gmond_gmond.conf.5

@@ -0,0 +1,21 @@
+$NetBSD: patch-gmond_gmond.conf.5,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Default paths.
+
+--- gmond/gmond.conf.5.orig	2015-07-01 19:49:35.000000000 +0000
++++ gmond/gmond.conf.5
+@@ -718,12 +718,12 @@ to be garbled.)
+ This directive allows the user to include additional configuration files
+ rather than having to add all gmond configuration directives to the
+ gmond.conf file.  The following example includes any file with the extension
+-of .conf contained in the directory conf.d as if the contents of the included 
++of .conf contained in the directory gmond.conf.d as if the contents of the included 
+ configuration files were part of the original gmond.conf file. This allows 
+ the user to modularize their configuration file.  One usage example might 
+ be to load individual metric modules by including module specific .conf files.
+ .PP
+-include ('/etc/ganglia/conf.d/*.conf')
++include ('/etc/ganglia/gmond.conf.d/*.conf')
+ .SH "ACCESS CONTROL"
+ .IX Header "ACCESS CONTROL"
+ The \fBudp_recv_channel\fR and \fBtcp_accept_channel\fR directives

parallel/ganglia-monitor-core/patches/patch-gmond_modules_conf.d_modpython.conf.in

@@ -0,0 +1,17 @@
+$NetBSD: patch-gmond_modules_conf.d_modpython.conf.in,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Default paths.
+
+--- gmond/modules/conf.d/modpython.conf.in.orig	2015-07-01 19:49:35.000000000 +0000
++++ gmond/modules/conf.d/modpython.conf.in
+@@ -9,8 +9,8 @@ modules {
+   module {
+     name = "python_module"
+     path = "modpython.so"
+-    params = "@moduledir@/python_modules"
++    params = "@moduledir@"
+   }
+ }
+ 
+-include ("@sysconfdir@/conf.d/*.pyconf")
++include ("@sysconfdir@/gmond.conf.d/*.pyconf")

parallel/ganglia-monitor-core/patches/patch-lib__update_pidfile.c

@@ -0,0 +1,15 @@
+$NetBSD: patch-lib__update_pidfile.c,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Portability.
+
+--- lib/update_pidfile.c.orig	2015-07-01 19:49:35.000000000 +0000
++++ lib/update_pidfile.c
+@@ -1,7 +1,7 @@
+ /**
+  * @file update_pidfile.c Functions for standalone daemons
+  */
+-#define _XOPEN_SOURCE 500 /* for getpgid */
++#define _XOPEN_SOURCE 700 /* for getpgid */
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <stdio.h>

parallel/ganglia-monitor-core/patches/patch-lib_default__conf.h.in

@@ -0,0 +1,15 @@
+$NetBSD: patch-lib_default__conf.h.in,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Default paths.
+
+--- lib/default_conf.h.in.orig	2015-07-01 19:49:35.000000000 +0000
++++ lib/default_conf.h.in
+@@ -393,7 +393,7 @@ collection_group {\n\
+   }\n\
+ }\n\
+ \n\
+-include (\"" SYSCONFDIR "/conf.d/*.conf\")\n\
++include (\"" SYSCONFDIR "/gmond.conf.d/*.conf\")\n\
+ \n\
+ "
+ 

parallel/ganglia-monitor-core/patches/patch-libmetrics__solaris__metrics.c

@@ -0,0 +1,15 @@
+$NetBSD: patch-libmetrics__solaris__metrics.c,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Portability.
+
+--- libmetrics/solaris/metrics.c.orig	2015-07-01 19:49:35.000000000 +0000
++++ libmetrics/solaris/metrics.c
+@@ -1362,7 +1362,7 @@ part_max_used_func ( void )
+ g_val_t
+ cpu_steal_func ( void )
+ {
+-   static g_val_t val=0;
++   static g_val_t val={0};
+    return val;
+ }
+ 

parallel/ganglia-monitor-core/patches/patch-libmetrics_freebsd_metrics.c

@@ -0,0 +1,24 @@
+$NetBSD: patch-libmetrics_freebsd_metrics.c,v 1.1 2016/02/16 12:48:18 fhajny Exp $
+
+Portability.
+
+--- libmetrics/freebsd/metrics.c.orig	2013-05-07 09:39:40.000000000 -0500
++++ libmetrics/freebsd/metrics.c	2014-10-14 15:32:43.000000000 -0500
+@@ -461,6 +461,17 @@
+    return val;
+ }
+ 
++/*
++** FIXME - Not yet implemented on FreeBSD.
++*/
++g_val_t
++cpu_steal_func ( void )
++{
++   g_val_t val;
++   val.f = 0.0;
++   return val;
++}
++
+ g_val_t
+ load_one_func ( void )
+ {

parallel/gridscheduler/Makefile

@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.17 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.21 2016/07/09 06:38:47 wiz Exp $
 
-PKGNAME=	gridscheduler-2011.11
-DISTNAME=	GE2011.11
-PKGREVISION=	9
+PKGNAME=	gridscheduler-2011.11.1
+PKGREVISION=	2
+DISTNAME=	GE2011.11p1
 CATEGORIES=	parallel sysutils
 MASTER_SITES=	${MASTER_SITE_SOURCEFORGE:=gridscheduler/}
 
@@ -12,9 +12,6 @@ COMMENT=	Open Grid Scheduler/Grid Engine resource management system
 
 BUILD_DEPENDS+=	{standalone-tcsh,tcsh}-[0-9]*:../../shells/tcsh
 
-# Not 64-bit clean; crashes during build.
-BROKEN_ON_PLATFORM=	${LP64PLATFORMS}
-
 GNU_CONFIGURE=	yes
 USE_TOOLS+=	gmake perl:run
 
@@ -36,8 +33,6 @@ PKG_GECOS.${SGE_USER}=	Sun Grid Engine Administrator
 PKG_GROUPS_VARS+=	SGE_GROUP
 PKG_USERS_VARS+=	SGE_USER
 
-EVAL_PREFIX+=	PKGSRC_SSL_PREFIX=openssl
-
 AIMK=	${SETENV} ${MAKE_ENV} tcsh -fb ${WRKSRC}/source/aimk
 
 CONFIG_GUESS_OVERRIDE=	source/3rdparty/qmake/config.guess \
@@ -109,12 +104,12 @@ post-patch:
 		${ECHO} "        `${WRKSRC}/source/dist/util/arch`" ; \
 		${FALSE} ; \
 	fi
-	( ${ECHO} "set OPENSSL_HOME = ${SSL_PREFIX}" ; \
+	( ${ECHO} "set OPENSSL_HOME = ${BUILDLINK_PREFIX.openssl}" ; \
 	${ECHO} "set BERKELEYDB_HOME = ${BUILDLINK_PREFIX.db4}" ; \
 	${ECHO} "set BDB_INCLUDE_SUBDIR = db4" ; \
 	${ECHO} "set BDB_LIB_SUFFIX = 4" ; \
 	${ECHO} "set PERL = ${PERL5}" ) > ${WRKSRC}/source/aimk.private
-	( ${ECHO} "OPENSSLBASE=${SSL_PREFIX}" ; \
+	( ${ECHO} "OPENSSLBASE=${BUILDLINK_PREFIX.openssl}" ; \
 	${ECHO} "BERKELEYDBBASE=${BUILDLINK_PREFIX.db4}" ) > ${WRKSRC}/source/distinst.private
 
 SUBST_CLASSES+=		paths
@@ -147,7 +142,7 @@ do-install:
 	for f in archive checkpoint deadlock dump load printlog recover stat upgrade verify ; do \
 		ln -s ${DESTDIR}${LOCALBASE}/bin/db4_$${f} ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/db_$${f} ; done
 	ln -s ${DESTDIR}${LOCALBASE}/bin/berkeley_db4_svc ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/berkeley_db_svc
-	ln -s ${DESTDIR}${SSL_PREFIX}/bin/openssl ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/openssl
+	ln -s ${DESTDIR}${BUILDLINK_PREFIX.openssl}/bin/openssl ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/openssl
 	cd ${DESTDIR}${SGE_ROOT} && ${SETENV} SGE_ROOT=${SGE_ROOT} DESTDIR=${DESTDIR} ./util/setfileperm.sh -auto \
 		${SGE_ROOT}
 	for f in ${DESTDIR}${SGE_ROOT}/bin/${SGE_ARCH}/q* ; do \
@@ -169,8 +164,3 @@ CHECK_INTERPRETER_SKIP=	sge/hadoop/pestart.sh \
 .include "../../lang/tcl/buildlink3.mk"
 .include "../../mk/motif.buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
-.if ${USE_BUILTIN.openssl} == "yes"
-SSL_PREFIX=	/usr
-.else
-SSL_PREFIX=	${PKGSRC_SSL_PREFIX}
-.endif

parallel/gridscheduler/PLIST

@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
+@comment $NetBSD: PLIST,v 1.2 2015/12/13 00:50:39 asau Exp $
 bin/qacct
 bin/qalter
 bin/qconf
@@ -393,7 +393,6 @@ sge/qmon/PIXMAPS/xterm.xpm
 sge/qmon/Qmon
 sge/qmon/qmon_help.ad
 sge/util/arch
-sge/util/arch.dist
 sge/util/arch_variables
 sge/util/arch_variables.orig
 sge/util/bdb_checkpoint.sh

parallel/gridscheduler/distinfo

@@ -1,15 +1,15 @@
-$NetBSD: distinfo,v 1.3 2013/12/28 07:03:11 asau Exp $
+$NetBSD: distinfo,v 1.6 2015/12/25 20:12:16 joerg Exp $
 
-SHA1 (GE2011.11.tar.gz) = bd06d10f7186652e9b264bf8256cb6b633d2b6b9
-RMD160 (GE2011.11.tar.gz) = 9ed02a132993c34c89a47ae8e3ac22fbf10d6506
-Size (GE2011.11.tar.gz) = 14293882 bytes
+SHA1 (GE2011.11p1.tar.gz) = 8935cc015e9de87d000b7e1814a1359b3cd6f3ca
+RMD160 (GE2011.11p1.tar.gz) = 535f453ace86bfa067cebad2b2b37d7e730aa779
+Size (GE2011.11p1.tar.gz) = 14305562 bytes
 SHA1 (patch-ad) = 0da714b6f9f2dfb0d952f84863a76fdac23aed8e
 SHA1 (patch-ag) = f33c490bbb93c6d37ef1937210bff7b92cf19207
-SHA1 (patch-ak) = e73a58e547b8401eff27a4635629577767234f0f
-SHA1 (patch-am) = 3098e0016eaaff35c119cf8d0f67e0838c3eb28a
+SHA1 (patch-ak) = d96eb75285ca793d96ae33a86c25b6f0e8f2d1b7
+SHA1 (patch-am) = 954f3bc8093c52910c0cae66423d4d4042d04043
 SHA1 (patch-at) = d29e29e4915f8015618a4ebc5b17231c2bcc4bf5
-SHA1 (patch-bd) = 3977477ccf3d67a3e807bbda42d072397a9d9485
-SHA1 (patch-bl) = 5cf177b4b3d31a6483da6daa5ec5ff840b3be7fe
+SHA1 (patch-bd) = 47e1a4f61916ec7038ed5ce9b8beedb0527c04e9
+SHA1 (patch-bl) = d13fd8f276093304fcd34769714cbcce95012809
 SHA1 (patch-bm) = a760a1f06ab301acb1f0dcb88151c308f381ab60
 SHA1 (patch-daemons_common_procfs.c) = cdcbf58cb3278d5bc718fd235aaa76a10e938002
 SHA1 (patch-source_libs_uti_sge__loadmem.c) = fa4a36931ef90f6d18f35bc1a081d0f7d2a0728a

parallel/gridscheduler/patches/patch-ak

@@ -1,10 +1,10 @@
-$NetBSD: patch-ak,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
+$NetBSD: patch-ak,v 1.2 2015/12/25 20:12:16 joerg Exp $
 
 Add LDFLAGS
 replace $(COMMLISTSLIB) with -lcommlists so that pkgsrc wrapper
 doesnt reorder.
 
---- source/utilbin/Makefile.orig	2011-11-14 19:00:55.000000000 +0000
+--- source/utilbin/Makefile.orig	2012-05-23 19:04:49.000000000 +0000
 +++ source/utilbin/Makefile
 @@ -146,7 +146,7 @@ read_raw.o:		$(UTILBIN_DIR)/read_raw.c
  
@@ -33,6 +33,15 @@ doesnt reorder.
  
  spooldefaults.o: $(UTILBIN_DIR)/spooldefaults.c
  		$(CC) $(CFLAGS) -c $(UTILBIN_DIR)/spooldefaults.c
+@@ -257,7 +257,7 @@ tst_pthread_signals.o: $(UTILBIN_DIR)/ts
+ 
+ #---------------------------------------------------------------------
+ spooledit: spooledit.o sge_mt_init.o $(SPOOLING_DEPS) $(SPOOLLIB) $(SCHEDLIB) $(EVCLIB) $(GDILIB) $(SGEOBJLIB) $(SGEOBJDLIB) $(COMMLIB) $(COMMLISTSLIB) $(CULLLIB) $(WINGRIDLIB_DEP) $(UTILIB) $(LCKLIB) $(RMONLIB)
+-		$(CC) -o $@ $(LFLAGS) spooledit.o version.o sge_mt_init.o -lspoolb $(SPOOLING_LIBS) -lsched -levc -lgdi -lsgeobj -lsgeobjd $(SECLIB) $(KRBLIB) -lcull -lcomm -lcommlists -luti $(WINGRIDLIB) -llck -lrmon -ldb$(BDB_LIB_SUFFIX) $(DLLIB) $(SLIBS) $(LIBS)
++		$(CC) -o $@ $(LFLAGS) ${COMPILER_RPATH_FLAG}${SGE_ROOT}/lib/${SGE_ARCH} spooledit.o version.o sge_mt_init.o -lspoolb $(SPOOLING_LIBS) -lsched -levc -lgdi -lsgeobj -lsgeobjd $(SECLIB) $(KRBLIB) -lcull -lcomm -lcommlists -luti $(WINGRIDLIB) -llck -lrmon -ldb$(BDB_LIB_SUFFIX) $(DLLIB) $(SLIBS) $(LIBS)
+ 
+ spooledit.o: $(UTILBIN_DIR)/spooledit.c
+ 		$(CC) $(CFLAGS) -c $(UTILBIN_DIR)/spooledit.c
 @@ -290,7 +290,7 @@ valid_jvmlib.o:		$(UTILBIN_DIR)/valid_jv
  		$(CC) $(CFLAGS) -c $(UTILBIN_DIR)/valid_jvmlib.c
  

parallel/gridscheduler/patches/patch-am

@@ -1,8 +1,8 @@
-$NetBSD: patch-am,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
+$NetBSD: patch-am,v 1.3 2015/12/25 20:12:16 joerg Exp $
 
---- source/aimk.orig	2011-11-14 19:01:16.000000000 +0000
+--- source/aimk.orig	2012-05-23 19:05:00.000000000 +0000
 +++ source/aimk
-@@ -412,7 +412,7 @@ set SPOOLING_DEPS   = "spoolloaderlib sp
+@@ -422,7 +422,7 @@ set SPOOLING_DEPS   = "spoolloaderlib sp
  # we generate a berkeley db shared lib, so we need bdb include and lib path
  set CFLAGS            = "-I$BERKELEYDB_HOME/include/${BDB_INCLUDE_SUBDIR} $CFLAGS"
  set LFLAGS            = "-L$BERKELEYDB_HOME/lib/${BDB_LIB_SUBDIR} $LFLAGS"
@@ -11,19 +11,35 @@ $NetBSD: patch-am,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
  
  # JUTI Targets
  set JUTI_ALL  = juti_all
-@@ -1301,9 +1301,9 @@ case NETBSD_*:
-    set DLLIB    = ""
+@@ -1301,11 +1301,11 @@ case FREEBSD_*:
+    set CFLAGS   = "$OFLAG -Wall -DFREEBSD -D$BUILDARCH -DGETHOSTBYNAME_M -DGETHOSTBYADDR_M $DEBUG_FLAG $CFLAGS -I/usr/X11R6/include"
     set DEPEND_FLAGS = "$CFLAGS $XMTINCD"
-    set PTHRDSFLAGS = "-D_REENTRANT -D__USE_REENTRANT"
--   set CFLAGS   = "$OFLAG -Wall -DNETBSD -D$BUILDARCH -DGETHOSTBYNAME_M -DGETHOSTBYADDR_M $DEBUG_FLAG $CFLAGS -I/usr/X11R6/include"
-+   set CFLAGS   = "$OFLAG -Wall -DNETBSD -D$BUILDARCH -DGETHOSTBYNAME_M -DGETHOSTBYADDR_M $DEBUG_FLAG $CFLAGS -I${X11BASE}/include"
     set NOERR_CFLAG = "-Wno-error"
 -   set LFLAGS   = "$DEBUG_FLAG $LFLAGS -export-dynamic"
-+   set LFLAGS   = "$DEBUG_FLAG $LFLAGS -export-dynamic -L${LOCALBASE}/lib -R${LOCALBASE}/lib"
++   set LFLAGS   = "$DEBUG_FLAG $LFLAGS -Wl,-export-dynamic"
     set LIBS     = "$LIBS -lkvm"
     set SHAREDLD = $CC
     set SHARED_CFLAGS = "-fPIC"
-@@ -1311,9 +1311,9 @@ case NETBSD_*:
+-   set SHARED_LFLAGS = "$SHARED_LFLAGS -L. -shared -export-dynamic"
++   set SHARED_LFLAGS = "$SHARED_LFLAGS -L. -shared"
+    set AUTHLIBS = "-lcrypt -lpam"
+  
+    set XMTDEF   = ""
+@@ -1334,20 +1334,20 @@ case NETBSD_*:
+    set CXX      = g++
+    set DLLIB    = ""
+    set PTHRDSFLAGS = "-D_REENTRANT -D__USE_REENTRANT"
+-   set CFLAGS   = "$OFLAG -Wall -DNETBSD -D$BUILDARCH -DGETHOSTBYNAME_M -DGETHOSTBYADDR_M $DEBUG_FLAG $CFLAGS -I/usr/X11R6/include"
++   set CFLAGS   = "$OFLAG -Wall -DNETBSD -D$BUILDARCH -DGETHOSTBYNAME_M -DGETHOSTBYADDR_M $DEBUG_FLAG $CFLAGS -I${X11BASE}/include"
+    set DEPEND_FLAGS = "$CFLAGS $XMTINCD"
+    set NOERR_CFLAG = "-Wno-error"
+-   set LFLAGS   = "$DEBUG_FLAG $LFLAGS -export-dynamic"
++   set LFLAGS   = "$DEBUG_FLAG $LFLAGS -Wl,-export-dynamic -L${LOCALBASE}/lib -R${LOCALBASE}/lib"
+    set LIBS     = "$LIBS -lkvm"
+    set SHAREDLD = $CC
+    set SHARED_CFLAGS = "-fPIC"
+-   set SHARED_LFLAGS = "$SHARED_LFLAGS -L. -shared -export-dynamic"
++   set SHARED_LFLAGS = "$SHARED_LFLAGS -L. -shared"
     set AUTHLIBS = "-lcrypt -lpam"
  
     set XMTDEF   = ""
@@ -34,17 +50,8 @@ $NetBSD: patch-am,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
 +   set XLIBD    = "-L${X11BASE}/lib -R${X11BASE}/lib -L${LOCALBASE}/lib -R ${LOCALBASE}/lib"
     set XLFLAGS  = "$XLIBD"
     set XLIBS    = " -lXm -lXpm -lXt -lXext -lX11 -lSM -lICE -lXp"
-    set RM       = "rm -f"
-@@ -2246,7 +2246,7 @@ endif
- 
- if ( $HWLOC == 1 ) then
-    set CFLAGS = "$CFLAGS -DTHREADBINDING -DHWLOC"
--   set CORE_INCLUDE = "$CORE_INCLUDE -I$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/include/ -I$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/include"
-+#   set CORE_INCLUDE = "$CORE_INCLUDE -I$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/include/ -I$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/include"
-    # set LFLAGS = "$LFLAGS -L$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/src/.libs/"
-    # set LIBS = "$LIBS -lhwloc"
-    set LIBS = "-L$SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/src/.libs/ -lhwloc $LIBS"
-@@ -2317,7 +2317,7 @@ if ( "$BUILDMAN" == 1 ) then
+    set XMLIBS   = "$XLIBS"
+@@ -2519,7 +2519,7 @@ if ( "$BUILDMAN" == 1 ) then
        exit 1
     endif   
  
@@ -53,67 +60,3 @@ $NetBSD: patch-am,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
  
     if ( $status != 0 ) then
        echo not done
-@@ -2581,36 +2581,36 @@ if ( "$PLPA" == 1 ) then
-    cd $SOURCE
- endif
- 
--if ( "$HWLOC" == 1 ) then
--   echo _________3_r_d_p_a_r_t_y__H_W_L_O_C_______
--
--      set maj_ver = `echo $HWLOC_VERSION| cut -f 1 -d .`
--      set min_ver = `echo $HWLOC_VERSION| cut -f 2 -d .`
--
--      if ( "$maj_ver" == 1 && "$min_ver" <= 2 ) then
--        set HWLOC_CFLAGS_EXTRA = "--disable-xml"
--      else
--        set HWLOC_CFLAGS_EXTRA = "--disable-libxml2 --disable-pci"
--      endif
--
--      if ( ! -d $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH || \
--           ! -r $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/Makefile ) then
--         mkdir -p $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
--         cd $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
--         env CFLAGS="$HWLOC_CFLAGS" ../configure --enable-static --disable-shared $HWLOC_CFLAGS_EXTRA
--      endif
-+# if ( "$HWLOC" == 1 ) then
-+#    echo _________3_r_d_p_a_r_t_y__H_W_L_O_C_______
- 
--      cd $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
-+#       set maj_ver = `echo $HWLOC_VERSION| cut -f 1 -d .`
-+#       set min_ver = `echo $HWLOC_VERSION| cut -f 2 -d .`
- 
--      $MAKE $MAKEOPT -f Makefile "MAKE=$MAKE" "COMPILE_ARCH=$COMPILE_ARCH" $argv
-+#       if ( "$maj_ver" == 1 && "$min_ver" <= 2 ) then
-+#         set HWLOC_CFLAGS_EXTRA = "--disable-xml"
-+#       else
-+#         set HWLOC_CFLAGS_EXTRA = "--disable-libxml2 --disable-pci"
-+#       endif
-+
-+#       if ( ! -d $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH || \
-+#            ! -r $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH/Makefile ) then
-+#          mkdir -p $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
-+#          cd $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
-+#          env CFLAGS="$HWLOC_CFLAGS" ../configure --enable-static --disable-shared $HWLOC_CFLAGS_EXTRA
-+#       endif
-+
-+#       cd $SOURCE/3rdparty/hwloc/$HWLOC_DIRECTORY/$COMPILE_ARCH
-+
-+#       $MAKE $MAKEOPT -f Makefile "MAKE=$MAKE" "COMPILE_ARCH=$COMPILE_ARCH" $argv
-+
-+#       if ( $status != 0 ) then
-+#          echo not done
-+#          exit 1
-+#       endif
- 
--      if ( $status != 0 ) then
--         echo not done
--         exit 1
--      endif
--
--   cd $SOURCE
--endif
-+#    cd $SOURCE
-+# endif
- 
- if ( "$MAKESTRPTIME" == 1 ) then
-    echo _________3_r_d_p_a_r_t_y__S_T_R_P_T_I_M_E_

parallel/gridscheduler/patches/patch-bd

@@ -1,11 +1,8 @@
-$NetBSD: patch-bd,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
+$NetBSD: patch-bd,v 1.3 2015/12/25 20:12:16 joerg Exp $
 
-Exclude Java files.
-DESTDIR support.
-
---- source/scripts/distinst.orig	2011-11-14 23:00:44.000000000 +0400
-+++ source/scripts/distinst	2012-02-22 01:09:06.000000000 +0400
-@@ -75,13 +75,13 @@
+--- source/scripts/distinst.orig	2012-05-23 19:04:39.000000000 +0000
++++ source/scripts/distinst
+@@ -75,13 +75,13 @@ DRMAA_SHARED_LIBRARIES="libdrmaa"
  # The last number listed here will be the verson linked from libdrmaa.so
  DRMAA_SHARED_LIB_VERSIONS="1.0"
  DRMAA_HEADER_FILES="libs/japi/drmaa.h"
@@ -23,16 +20,16 @@ DESTDIR support.
  JAVA_LIBRARIES="${DRMAAJ_FILES} ${JUTIJ_FILES} ${JGDIJ_FILES} ${JJSV_FILES}"
  
  PVMSOURCES="start_pvm.c stop_pvm.c slave.c master.c spmd.c Makefile"
-@@ -428,7 +428,7 @@
+@@ -430,7 +430,7 @@ instclassictargets=false
  instopenssl=true
  instbdb=true
  instarco=false
 -instguiinst=true
 +instguiinst=false
  instsgeinspect=false
+ accept_prompts=false
  enforce_shlibpath=false
- 
-@@ -527,11 +527,11 @@
+@@ -530,11 +530,11 @@ while [ $# -ge 1 ]; do
           echo Please set variable SGE_ROOT. Installation failed.
           exit 1
        fi
@@ -47,7 +44,7 @@ DESTDIR support.
        localinst=true
        ;;
     -mansrc)
-@@ -897,13 +897,16 @@
+@@ -901,13 +901,16 @@ if [ $instcommon = true ]; then
                          $DEST_SGE_ROOT/util/sgeCA/*.cnf \
                          $DEST_SGE_ROOT/util/sgeSMF/*.xml \
                          $DEST_SGE_ROOT/util/sgeSMF/sge_smf_support.sh \
@@ -65,7 +62,7 @@ DESTDIR support.
        Execute chmod 755 $DEST_SGE_ROOT/util/resources/jsv/jsv.sh \
                          $DEST_SGE_ROOT/util/resources/jsv/jjsv.sh \
                          $DEST_SGE_ROOT/util/resources/jsv/jsv.pl \
-@@ -1085,9 +1088,6 @@
+@@ -1089,9 +1092,6 @@ if [ $instcommon = true ]; then
  
        if [ -f CLASSES/herd/herd.jar ]; then
           Execute cp CLASSES/herd/herd.jar $DEST_SGE_ROOT/lib/herd.jar
@@ -75,3 +72,22 @@ DESTDIR support.
        fi
     fi
  
+@@ -1121,11 +1121,14 @@ if [ $instcommon = true ]; then
+ 
+       Execute find $DEST_SGE_ROOT/man -type d | xargs chmod 755
+       Execute find $DEST_SGE_ROOT/man -type f | xargs chmod 644
+-
+-      Execute find $DEST_SGE_ROOT/catman -type d | xargs chmod 755
+-      Execute find $DEST_SGE_ROOT/catman -type f | xargs chmod 644
+       
+-      Cleanup man catman
++      Cleanup man
++
++      if [ -d MANSBUILD_$MANSRCDIR/ASCMAN/catman ]; then
++         Execute find $DEST_SGE_ROOT/catman -type d | xargs chmod 755
++         Execute find $DEST_SGE_ROOT/catman -type f | xargs chmod 644
++        Cleanup catman
++      fi
+    fi
+ 
+    if [ $instdoc = true ]; then

parallel/gridscheduler/patches/patch-bl

@@ -1,18 +1,8 @@
-$NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
+$NetBSD: patch-bl,v 1.2 2015/12/13 00:50:39 asau Exp $
 
---- source/libs/comm/cl_ssl_framework.c.orig	2009-02-16 08:50:41.000000000 +0000
+--- source/libs/comm/cl_ssl_framework.c.orig	2012-05-23 19:04:40.000000000 +0000
 +++ source/libs/comm/cl_ssl_framework.c
-@@ -104,6 +104,9 @@
- #define OPENSSL_CONST const
- #endif
- 
-+#if defined(OPENSSL_VERSION_NUMBER) && OPENSSL_VERSION_NUMBER >= 0x10000000L
-+typedef _STACK STACK;
-+#endif
- 
- #define cl_com_ssl_func__SSL_CTX_set_mode(ctx,op) \
- 	cl_com_ssl_func__SSL_CTX_ctrl((ctx),SSL_CTRL_MODE,(op),NULL)
-@@ -161,8 +164,8 @@ static int                  (*cl_com_ssl
+@@ -168,8 +168,8 @@ static int                  (*cl_com_ssl
  static void                 (*cl_com_ssl_func__SSL_set_bio)                         (SSL *s, BIO *rbio,BIO *wbio);
  static int                  (*cl_com_ssl_func__SSL_accept)                          (SSL *ssl);
  static void                 (*cl_com_ssl_func__SSL_CTX_free)                        (SSL_CTX *);
@@ -23,7 +13,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
  static int                  (*cl_com_ssl_func__SSL_CTX_use_certificate_chain_file)  (SSL_CTX *ctx, const char *file);
  static int                  (*cl_com_ssl_func__SSL_CTX_use_certificate)             (SSL_CTX *ctx, X509 *cert);
  static int                  (*cl_com_ssl_func__SSL_CTX_use_PrivateKey_file)         (SSL_CTX *ctx, const char *file, int type);
-@@ -243,9 +246,9 @@ static void                 (*cl_com_ssl
+@@ -250,9 +250,9 @@ static void                 (*cl_com_ssl
  static void                 (*cl_com_ssl_func__X509_STORE_CTX_set_error)            (X509_STORE_CTX *ctx,int s);
  static void                 (*cl_com_ssl_func__X509_OBJECT_free_contents)           (X509_OBJECT *a);
  static ASN1_INTEGER*        (*cl_com_ssl_func__X509_get_serialNumber)               (X509 *x);
@@ -36,7 +26,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
  static int                  (*cl_com_ssl_func__X509_CRL_verify)                     (X509_CRL *a, EVP_PKEY *r);
  static EVP_PKEY*            (*cl_com_ssl_func__X509_get_pubkey)                     (X509 *x);
  static int                  (*cl_com_ssl_func__X509_STORE_set_default_paths)        (X509_STORE *ctx);
-@@ -1040,7 +1043,7 @@ static int cl_com_ssl_build_symbol_table
+@@ -1047,7 +1047,7 @@ static int cl_com_ssl_build_symbol_table
     {
        char* func_name = NULL;
        int had_errors = 0;
@@ -45,7 +35,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
        void* cl_com_ssl_crypto_handle_saved = NULL;
  #endif
  
-@@ -1062,7 +1065,7 @@ static int cl_com_ssl_build_symbol_table
+@@ -1069,7 +1069,7 @@ static int cl_com_ssl_build_symbol_table
        cl_com_ssl_crypto_handle = dlopen ("libssl.dylib", RTLD_NOW | RTLD_GLOBAL );
  #endif /* RTLD_NODELETE */
  
@@ -54,7 +44,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
  #ifdef RTLD_NODELETE
        cl_com_ssl_crypto_handle = dlopen ("libssl.so", RTLD_LAZY | RTLD_GLOBAL | RTLD_NODELETE);
  #else
-@@ -1091,7 +1094,7 @@ static int cl_com_ssl_build_symbol_table
+@@ -1098,7 +1098,7 @@ static int cl_com_ssl_build_symbol_table
           return CL_RETVAL_SSL_DLOPEN_SSL_LIB_FAILED;
        }
        
@@ -63,7 +53,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
        cl_com_ssl_crypto_handle_saved = cl_com_ssl_crypto_handle;
        cl_com_ssl_crypto_handle = RTLD_DEFAULT;
  #endif
-@@ -1204,14 +1207,14 @@ static int cl_com_ssl_build_symbol_table
+@@ -1211,14 +1211,14 @@ static int cl_com_ssl_build_symbol_table
        }
  
        func_name = "SSL_CTX_new";
@@ -80,7 +70,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
        if (cl_com_ssl_func__SSLv23_method == NULL) {
           CL_LOG_STR(CL_LOG_ERROR,"dlsym error: can't get function address:", func_name);
           had_errors++;
-@@ -1750,21 +1753,21 @@ static int cl_com_ssl_build_symbol_table
+@@ -1757,21 +1757,21 @@ static int cl_com_ssl_build_symbol_table
        }
  
        func_name = "X509_cmp_current_time";
@@ -105,7 +95,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
        if (cl_com_ssl_func__ASN1_INTEGER_get == NULL) {
           CL_LOG_STR(CL_LOG_ERROR,"dlsym error: can't get function address:", func_name);
           had_errors++;
-@@ -1813,7 +1816,7 @@ static int cl_com_ssl_build_symbol_table
+@@ -1820,7 +1820,7 @@ static int cl_com_ssl_build_symbol_table
           return CL_RETVAL_SSL_CANT_LOAD_ALL_FUNCTIONS;
        }
  
@@ -114,7 +104,7 @@ $NetBSD: patch-bl,v 1.1.1.1 2012/03/21 20:48:53 asau Exp $
        cl_com_ssl_crypto_handle = cl_com_ssl_crypto_handle_saved;
  #endif
  
-@@ -1918,7 +1921,7 @@ static int cl_com_ssl_build_symbol_table
+@@ -1925,7 +1925,7 @@ static int cl_com_ssl_build_symbol_table
        cl_com_ssl_func__SSL_CTX_get_ex_data = (void* (*)(SSL_CTX *ssl,int idx))SSL_CTX_get_ex_data;
        cl_com_ssl_func__SSL_CTX_set_ex_data = SSL_CTX_set_ex_data;
        cl_com_ssl_func__sk_num = sk_num;

parallel/hwloc/Makefile

@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.17 2015/08/18 07:31:16 wiz Exp $
+# $NetBSD: Makefile,v 1.18 2015/11/14 17:12:35 asau Exp $
 
-DISTNAME=	hwloc-1.11.0
-PKGREVISION=	1
+DISTNAME=	hwloc-1.11.1
 CATEGORIES=	parallel
 MASTER_SITES=	http://www.open-mpi.org/software/hwloc/v1.11/downloads/
 
@@ -11,15 +10,12 @@ COMMENT=	Portable Hardware Locality
 LICENSE=	modified-bsd
 
 USE_LIBTOOL=		yes
-USE_TOOLS+=		aclocal automake autoconf autoreconf pkg-config
+USE_TOOLS+=		pkg-config
 GNU_CONFIGURE=		yes
 CONFIGURE_ARGS+=	--enable-picky
 
 TEST_TARGET=	check
 
-pre-configure:
-	cd ${WRKSRC} && autoreconf -ivf
-
 # libpci??
 #.include "../../graphics/cairo/buildlink3.mk" # optional
 .include "../../textproc/libxml2/buildlink3.mk"

parallel/hwloc/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.7 2015/08/15 21:27:46 asau Exp $
+$NetBSD: distinfo,v 1.9 2015/11/14 17:12:35 asau Exp $
 
-SHA1 (hwloc-1.11.0.tar.gz) = ef23a4b451fce4ff8e231caec095f3da94f7d40d
-RMD160 (hwloc-1.11.0.tar.gz) = 4db1bccbf3888a08354cffeefe63f3da6cc02334
-Size (hwloc-1.11.0.tar.gz) = 4392313 bytes
+SHA1 (hwloc-1.11.1.tar.gz) = e748a103ab9b47399e75955bff93cdccf58cbf77
+RMD160 (hwloc-1.11.1.tar.gz) = 74d8404cff820f1f528a8b47ec20f2043cc7e23e
+SHA512 (hwloc-1.11.1.tar.gz) = e14f588026e548c82a7f8855ba9fc5c605e300f358e6662fd75b702187963074ee48e98109aa05847d13d451348b2778573988f841d9159033076ada5cd025f6
+Size (hwloc-1.11.1.tar.gz) = 4334074 bytes

parallel/linda/distinfo

@@ -1,6 +1,7 @@
-$NetBSD: distinfo,v 1.3 2012/11/19 03:01:07 joerg Exp $
+$NetBSD: distinfo,v 1.4 2015/11/02 23:46:12 agc Exp $
 
 SHA1 (linda-0.1.1.tar.gz) = 84cd0a614ce049908a0dbe2dabcc317493534fec
 RMD160 (linda-0.1.1.tar.gz) = 0148408654945cebde41639ccbff4b792d35eada
+SHA512 (linda-0.1.1.tar.gz) = bc0a232b6c545222bbc04520aa55e53941c3900a43e9b901a9134d70b49be5512cd897d69d365a4b237420415fbed23d7c0e9b8e06bd522a9c76cd9c31e55c72
 Size (linda-0.1.1.tar.gz) = 187939 bytes
 SHA1 (patch-src_tuplespace.c) = f8f7f6de36224ed8435776cb952d8fc862316ffa

parallel/mpi-ch/Makefile

@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.80 2015/09/23 12:02:50 joerg Exp $
+# $NetBSD: Makefile,v 1.82 2016/07/09 06:38:47 wiz Exp $
 
 DISTNAME=	mpich-3.0.4
-PKGREVISION=	3
+PKGREVISION=	4
 CATEGORIES=	parallel
 MASTER_SITES=	http://www.mpich.org/static/tarballs/${PKGVERSION_NOREV}/
 
@@ -14,7 +14,6 @@ DEPENDS+=	bash-[0-9]*:../../shells/bash
 #MPI_SUBPREFIX=		mpich
 #MPI_PREFIX=		${LOCALBASE}/${MPI_SUBPREFIX}
 MPI_PREFIX=		${LOCALBASE}
-INSTALLATION_PREFIX=	${MPI_PREFIX}
 
 OVERRIDE_DIRDEPTH=	3
 

parallel/mpi-ch/buildlink3.mk

@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.17 2013/04/30 06:59:27 asau Exp $
+# $NetBSD: buildlink3.mk,v 1.18 2015/11/25 12:52:26 jperkin Exp $
 
 BUILDLINK_TREE+=	mpich
 
@@ -9,8 +9,6 @@ BUILDLINK_API_DEPENDS.mpich+=	mpich>=3
 BUILDLINK_PKGSRCDIR.mpich?=	../../parallel/mpi-ch
 
 MPI_PREFIX?=	$(BUILDLINK_PREFIX.mpich)
-FIND_PREFIX:=	BUILDLINK_PREFIX.mpich=mpich
-.include "../../mk/find-prefix.mk"
 
 .include "../../parallel/openpa/buildlink3.mk"
 .endif	# MPICH_BUILDLINK3_MK

parallel/mpi-ch/distinfo

@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.24 2013/05/10 08:24:57 adam Exp $
+$NetBSD: distinfo,v 1.25 2015/11/02 23:46:12 agc Exp $
 
 SHA1 (mpich-3.0.4.tar.gz) = e89cc8de89d18d5718f7b881f3835b5a0943f897
 RMD160 (mpich-3.0.4.tar.gz) = c14b3b335be863dd36c0a58630c969719d8ef217
+SHA512 (mpich-3.0.4.tar.gz) = f9d8b2cf561fe5f85c12512ef4dd7b0cf5ec8b53ddb07bfa0d1db2e3c8ae0382c77e0661f46b82ec96b05d18ea2d25328bb84e9528ac06e5925f30ec8ef030d0
 Size (mpich-3.0.4.tar.gz) = 10921075 bytes
 SHA1 (patch-Makefile.in) = 32a78a384ecb94a30631a8a756e746edbe6e0060
 SHA1 (patch-configure) = 0e7fec4d30e33387d8b434c6b4e90bab1daa42ba

parallel/openmpi/Makefile

@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.31 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.35 2016/07/09 06:38:48 wiz Exp $
 
-DISTNAME=	openmpi-1.6.4
-PKGREVISION=	5
+DISTNAME=	openmpi-1.10.1
+PKGREVISION=	2
 CATEGORIES=	parallel
-MASTER_SITES=	http://www.open-mpi.org/software/ompi/v1.6/downloads/
+MASTER_SITES=	http://www.open-mpi.org/software/ompi/v1.10/downloads/
 EXTRACT_SUFX=	.tar.bz2
 
 MAINTAINER=	asau@inbox.ru
@@ -17,12 +17,11 @@ LIBTOOL_OVERRIDE=	${WRKSRC}/libtool \
 			${WRKSRC}/ompi/contrib/vt/vt/extlib/otf/libtool \
 			${WRKSRC}/ompi/contrib/vt/vt/libtool \
 			${WRKSRC}/ompi/mca/io/romio/romio/libtool
-SHLIBTOOL_OVERRIDE=	${WRKSRC}/config/libtool.m4 \
-			${WRKSRC}/opal/libltdl/m4/libtool.m4
+SHLIBTOOL_OVERRIDE=	${WRKSRC}/config/libtool.m4
 
 CONFIGURE_ARGS+=	--without-slurm
 CONFIGURE_ARGS+=	--enable-contrib-no-build=vt # in separate package
-CONFIGURE_ARGS+=	--with-libltdl=external # use our libltdl
+CONFIGURE_ARGS+=	--with-libltdl=$(BUILDLINK_PREFIX.libltdl:Q) # use our libltdl
 CONFIGURE_ARGS+=	--with-hwloc=$(BUILDLINK_PREFIX.hwloc:Q) #external
 CONFIGURE_ARGS+=	--with-wrapper-ldflags="-L${PREFIX}/lib ${LINKER_RPATH_FLAG}${PREFIX}/lib"
 CONFIGURE_ENV+=		ompi_cv_f77_have_INTEGERp8=no	# no "INTEGER*8"??
@@ -37,31 +36,38 @@ USE_TOOLS+=		perl:run
 
 TEST_TARGET=	check
 
-PLIST_VARS+=	linux loadleveler notifier-smtp ofud openib shm
+PLIST_VARS+=	f08 linux loadleveler oshmem pstattest shm
+PLIST_VARS+=	ignoretkr noignoretkr
 
 .if ${OPSYS} == "Linux"
 PLIST.shm=		yes
 PLIST.linux=		yes
-PLIST.openib=		yes
 PLIST.loadleveler=	yes
-PLIST.ofud=		yes
-PLIST.notifier-smtp=	yes
+PLIST.oshmem=		yes
+PLIST.ignoretkr=	yes
+PLIST.f08=		yes
 .elif ${OPSYS} == "AIX"
 PLIST.loadleveler=	yes
 .elif ${OPSYS} == "DragonFly" || ${OPSYS} == "FreeBSD" || \
     (${OPSYS} == "NetBSD" && exists(/var/shm))
 PLIST.shm=		yes
 .endif
+.if ${OPSYS} != "Linux"
+PLIST.pstattest=	yes
+PLIST.noignoretkr=	yes
+.endif
 
 ## Just in case you'll need it...
 # USE_TOOLS+=	aclocal autoconf automake bash perl
 # REPLACE_BASH=	autogen.sh
 
+REPLACE_PERL=	 ompi/tools/wrappers/mpijavac.pl.in
+
 # pre-configure:	replace-interpreter
 # 	cd $(WRKSRC) && $(BASH) autogen.sh
 
-LIBLTDL_CONVENIENCE_SUBDIR=	opal/libltdl
-.include "../../devel/libltdl/convenience.mk" # for "test" target to work
+#LIBLTDL_CONVENIENCE_SUBDIR=	opal/libltdl
+#.include "../../devel/libltdl/convenience.mk" # for "test" target to work
 .include "../../devel/libltdl/buildlink3.mk"
 .include "../../parallel/hwloc/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"

parallel/openmpi/PLIST

@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.13 2015/01/15 20:51:11 dholland Exp $
+@comment $NetBSD: PLIST,v 1.15 2015/12/13 06:49:01 markd Exp $
 bin/mpiCC
 bin/mpic++
 bin/mpicc
@@ -6,34 +6,48 @@ bin/mpicxx
 bin/mpiexec
 bin/mpif77
 bin/mpif90
+bin/mpifort
+${PLIST.java}bin/mpijavac
+${PLIST.java}bin/mpijavac.pl
 bin/mpirun
 bin/ompi-clean
-bin/ompi-iof
-bin/ompi-probe
-bin/ompi-profiler
 bin/ompi-ps
 bin/ompi-server
 bin/ompi-top
 bin/ompi_info
 bin/opal_wrapper
-bin/orte-bootproxy.sh
 bin/orte-clean
-bin/orte-iof
+bin/orte-dvm
+bin/orte-info
 bin/orte-ps
+bin/orte-server
+bin/orte-submit
 bin/orte-top
-bin/orteCC
-bin/orte_wrapper_script
-bin/ortec++
 bin/ortecc
 bin/orted
 bin/orterun
+${PLIST.oshmem}bin/oshcc
+${PLIST.oshmem}bin/oshfort
+${PLIST.oshmem}bin/oshmem_info
+${PLIST.oshmem}bin/oshrun
+${PLIST.oshmem}bin/shmemcc
+${PLIST.oshmem}bin/shmemfort
+${PLIST.oshmem}bin/shmemrun
 include/mpi-ext.h
 include/mpi.h
 include/mpi_portable_platform.h
-include/mpif-common.h
 include/mpif-config.h
-include/mpif-mpi-io.h
+include/mpif-constants.h
+include/mpif-ext.h
+include/mpif-externals.h
+include/mpif-handles.h
+include/mpif-io-constants.h
+include/mpif-io-handles.h
+include/mpif-sentinels.h
+include/mpif-sizeof.h
 include/mpif.h
+${PLIST.oshmem}include/mpp/shmem.fh
+${PLIST.oshmem}include/mpp/shmem.h
 include/openmpi/ompi/mpi/cxx/comm.h
 include/openmpi/ompi/mpi/cxx/comm_inln.h
 include/openmpi/ompi/mpi/cxx/constants.h
@@ -65,99 +79,155 @@ include/openmpi/ompi/mpi/cxx/topology.h
 include/openmpi/ompi/mpi/cxx/topology_inln.h
 include/openmpi/ompi/mpi/cxx/win.h
 include/openmpi/ompi/mpi/cxx/win_inln.h
+${PLIST.java}include/openmpi/ompi/mpi/java/mpiJava.h
+${PLIST.oshmem}include/openshmem/oshmem_config.h
+${PLIST.oshmem}include/openshmem/oshmem/constants.h
+${PLIST.oshmem}include/openshmem/oshmem/frameworks.h
+${PLIST.oshmem}include/openshmem/oshmem/types.h
+${PLIST.oshmem}include/openshmem/oshmem/version.h
+${PLIST.oshmem}include/pshmem.h
+${PLIST.oshmem}include/pshmemx.h
+${PLIST.oshmem}include/shmem-compat.h
+${PLIST.oshmem}include/shmem.fh
+${PLIST.oshmem}include/shmem.h
+${PLIST.oshmem}include/shmemx.h
 lib/libmca_common_sm.la
 lib/libmpi.la
 lib/libmpi_cxx.la
-lib/libmpi_f77.la
-${PLIST.f90}lib/libmpi_f90.la
+${PLIST.java}lib/libmpi_java.la
+lib/libmpi_mpifh.la
+${PLIST.noignoretkr}lib/libmpi_usempi.la
+${PLIST.ignoretkr}lib/libmpi_usempi_ignore_tkr.la
+${PLIST.f08}lib/libmpi_usempif08.la
 lib/libompitrace.la
 lib/libopen-pal.la
 lib/libopen-rte.la
-${PLIST.f90}lib/mpi.mod
+${PLIST.oshmem}lib/liboshmem.la
+${PLIST.java}lib/mpi.jar
+lib/mpi.mod
+${PLIST.ignoretkr}lib/mpi_ext.mod
+${PLIST.f08}lib/mpi_f08.mod
+${PLIST.f08}lib/mpi_f08_ext.mod
+${PLIST.f08}lib/mpi_f08_interfaces.mod
+${PLIST.f08}lib/mpi_f08_interfaces_callbacks.mod
+${PLIST.f08}lib/mpi_f08_types.mod
 lib/openmpi/libompi_dbg_msgq.la
 lib/openmpi/mca_allocator_basic.la
 lib/openmpi/mca_allocator_bucket.la
-${PLIST.ofud}lib/openmpi/mca_btl_ofud.la                
-${PLIST.openib}lib/openmpi/mca_btl_openib.la              
+${PLIST.oshmem}lib/openmpi/mca_atomic_basic.la
+lib/openmpi/mca_bcol_basesmuma.la
+lib/openmpi/mca_bcol_ptpcoll.la
 lib/openmpi/mca_bml_r2.la
 lib/openmpi/mca_btl_self.la
 lib/openmpi/mca_btl_sm.la
 lib/openmpi/mca_btl_tcp.la
-lib/openmpi/mca_carto_auto_detect.la
-lib/openmpi/mca_carto_file.la
+lib/openmpi/mca_btl_vader.la
 lib/openmpi/mca_coll_basic.la
 lib/openmpi/mca_coll_hierarch.la
 lib/openmpi/mca_coll_inter.la
+lib/openmpi/mca_coll_libnbc.la
+lib/openmpi/mca_coll_ml.la
 lib/openmpi/mca_coll_self.la
 lib/openmpi/mca_coll_sm.la
-lib/openmpi/mca_coll_sync.la
 lib/openmpi/mca_coll_tuned.la
+lib/openmpi/mca_compress_bzip.la
+lib/openmpi/mca_compress_gzip.la
 lib/openmpi/mca_crs_none.la
+lib/openmpi/mca_db_hash.la
+lib/openmpi/mca_db_print.la
+lib/openmpi/mca_dfs_app.la
+lib/openmpi/mca_dfs_orted.la
+lib/openmpi/mca_dfs_test.la
 lib/openmpi/mca_dpm_orte.la
-lib/openmpi/mca_errmgr_default.la
+lib/openmpi/mca_errmgr_default_app.la
+lib/openmpi/mca_errmgr_default_hnp.la
+lib/openmpi/mca_errmgr_default_orted.la
+lib/openmpi/mca_errmgr_default_tool.la
 lib/openmpi/mca_ess_env.la
 lib/openmpi/mca_ess_hnp.la
 lib/openmpi/mca_ess_singleton.la
-lib/openmpi/mca_ess_slave.la
 lib/openmpi/mca_ess_tool.la
-lib/openmpi/mca_filem_rsh.la
+lib/openmpi/mca_fbtl_posix.la
+lib/openmpi/mca_fcoll_dynamic.la
+lib/openmpi/mca_fcoll_individual.la
+lib/openmpi/mca_fcoll_static.la
+lib/openmpi/mca_fcoll_two_phase.la
+lib/openmpi/mca_fcoll_ylib.la
+lib/openmpi/mca_filem_raw.la
+lib/openmpi/mca_fs_ufs.la
 lib/openmpi/mca_grpcomm_bad.la
-lib/openmpi/mca_grpcomm_basic.la
-lib/openmpi/mca_grpcomm_hier.la
+lib/openmpi/mca_io_ompio.la
 lib/openmpi/mca_io_romio.la
 lib/openmpi/mca_iof_hnp.la
+lib/openmpi/mca_iof_mr_hnp.la
+lib/openmpi/mca_iof_mr_orted.la
 lib/openmpi/mca_iof_orted.la
 lib/openmpi/mca_iof_tool.la
-lib/openmpi/mca_maffinity_first_use.la
-lib/openmpi/mca_maffinity_hwloc.la
-lib/openmpi/mca_mpool_fake.la
-lib/openmpi/mca_mpool_rdma.la
+${PLIST.oshmem}lib/openmpi/mca_memheap_buddy.la
+${PLIST.oshmem}lib/openmpi/mca_memheap_ptmalloc.la
+lib/openmpi/mca_mpool_grdma.la
 lib/openmpi/mca_mpool_sm.la
-lib/openmpi/mca_notifier_command.la
-${PLIST.notifier-smtp}lib/openmpi/mca_notifier_smtp.la           
-lib/openmpi/mca_notifier_syslog.la
 lib/openmpi/mca_odls_default.la
 lib/openmpi/mca_oob_tcp.la
 lib/openmpi/mca_osc_pt2pt.la
-lib/openmpi/mca_osc_rdma.la
-lib/openmpi/mca_paffinity_hwloc.la
+lib/openmpi/mca_osc_sm.la
+lib/openmpi/mca_plm_isolated.la
 lib/openmpi/mca_plm_rsh.la
 lib/openmpi/mca_pml_bfo.la
 lib/openmpi/mca_pml_cm.la
-lib/openmpi/mca_pml_csum.la
 lib/openmpi/mca_pml_ob1.la
-lib/openmpi/mca_pml_v.la
 ${PLIST.linux}lib/openmpi/mca_pstat_linux.la
+${PLIST.pstattest}lib/openmpi/mca_pstat_test.la
 lib/openmpi/mca_pubsub_orte.la
-lib/openmpi/mca_ras_cm.la
 ${PLIST.sge}lib/openmpi/mca_ras_gridengine.la
 ${PLIST.loadleveler}lib/openmpi/mca_ras_loadleveler.la
+lib/openmpi/mca_ras_simulator.la
 lib/openmpi/mca_rcache_vma.la
-lib/openmpi/mca_rmaps_load_balance.la
+lib/openmpi/mca_rmaps_mindist.la
+lib/openmpi/mca_rmaps_ppr.la
 lib/openmpi/mca_rmaps_rank_file.la
 lib/openmpi/mca_rmaps_resilient.la
 lib/openmpi/mca_rmaps_round_robin.la
 lib/openmpi/mca_rmaps_seq.la
-lib/openmpi/mca_rmaps_topo.la
+lib/openmpi/mca_rmaps_staged.la
 lib/openmpi/mca_rml_oob.la
 lib/openmpi/mca_routed_binomial.la
-lib/openmpi/mca_routed_cm.la
+lib/openmpi/mca_routed_debruijn.la
 lib/openmpi/mca_routed_direct.la
-lib/openmpi/mca_routed_linear.la
 lib/openmpi/mca_routed_radix.la
-lib/openmpi/mca_routed_slave.la
+lib/openmpi/mca_sbgp_basesmsocket.la
+lib/openmpi/mca_sbgp_basesmuma.la
+lib/openmpi/mca_sbgp_p2p.la
+${PLIST.oshmem}lib/openmpi/mca_scoll_basic.la
+${PLIST.oshmem}lib/openmpi/mca_scoll_mpi.la
+lib/openmpi/mca_sec_basic.la
+lib/openmpi/mca_sharedfp_individual.la
+lib/openmpi/mca_sharedfp_lockedfile.la
+lib/openmpi/mca_sharedfp_sm.la
 lib/openmpi/mca_shmem_mmap.la
-${PLIST.shm}lib/openmpi/mca_shmem_posix.la
+lib/openmpi/mca_shmem_posix.la
 lib/openmpi/mca_shmem_sysv.la
-${PLIST.linux}lib/openmpi/mca_sysinfo_linux.la
-lib/openmpi/mca_topo_unity.la
+${PLIST.oshmem}lib/openmpi/mca_spml_yoda.la
+${PLIST.oshmem}lib/openmpi/mca_sshmem_mmap.la
+${PLIST.oshmem}lib/openmpi/mca_sshmem_sysv.la
+lib/openmpi/mca_state_app.la
+lib/openmpi/mca_state_dvm.la
+lib/openmpi/mca_state_hnp.la
+lib/openmpi/mca_state_novm.la
+lib/openmpi/mca_state_orted.la
+lib/openmpi/mca_state_staged_hnp.la
+lib/openmpi/mca_state_staged_orted.la
+lib/openmpi/mca_state_tool.la
+lib/openmpi/mca_topo_basic.la
 lib/openmpi/mca_vprotocol_pessimist.la
 lib/pkgconfig/ompi-c.pc
 lib/pkgconfig/ompi-cxx.pc
 lib/pkgconfig/ompi-f77.pc
 lib/pkgconfig/ompi-f90.pc
+lib/pkgconfig/ompi-fort.pc
 lib/pkgconfig/ompi.pc
 lib/pkgconfig/orte.pc
+${PLIST.f08}lib/pmpi_f08_interfaces.mod
 man/man1/mpiCC.1
 man/man1/mpic++.1
 man/man1/mpicc.1
@@ -165,23 +235,31 @@ man/man1/mpicxx.1
 man/man1/mpiexec.1
 man/man1/mpif77.1
 man/man1/mpif90.1
+man/man1/mpifort.1
+${PLIST.java}man/man1/mpijavac.1
 man/man1/mpirun.1
 man/man1/ompi-clean.1
-man/man1/ompi-iof.1
-man/man1/ompi-probe.1
-man/man1/ompi-profiler.1
 man/man1/ompi-ps.1
 man/man1/ompi-server.1
 man/man1/ompi-top.1
 man/man1/ompi_info.1
 man/man1/opal_wrapper.1
 man/man1/orte-clean.1
-man/man1/orte-iof.1
+man/man1/orte-dvm.1
+man/man1/orte-info.1
 man/man1/orte-ps.1
+man/man1/orte-server.1
+man/man1/orte-submit.1
 man/man1/orte-top.1
-man/man1/orteCC.1
 man/man1/orted.1
 man/man1/orterun.1
+${PLIST.oshmem}man/man1/oshcc.1
+${PLIST.oshmem}man/man1/oshfort.1
+${PLIST.oshmem}man/man1/oshrun.1
+${PLIST.oshmem}man/man1/oshmem_info.1
+${PLIST.oshmem}man/man1/shmemcc.1
+${PLIST.oshmem}man/man1/shmemfort.1
+${PLIST.oshmem}man/man1/shmemrun.1
 man/man3/MPI.3
 man/man3/MPI_Abort.3
 man/man3/MPI_Accumulate.3
@@ -189,6 +267,8 @@ man/man3/MPI_Add_error_class.3
 man/man3/MPI_Add_error_code.3
 man/man3/MPI_Add_error_string.3
 man/man3/MPI_Address.3
+man/man3/MPI_Aint_add.3
+man/man3/MPI_Aint_diff.3
 man/man3/MPI_Allgather.3
 man/man3/MPI_Allgatherv.3
 man/man3/MPI_Alloc_mem.3
@@ -222,31 +302,42 @@ man/man3/MPI_Comm_compare.3
 man/man3/MPI_Comm_connect.3
 man/man3/MPI_Comm_create.3
 man/man3/MPI_Comm_create_errhandler.3
+man/man3/MPI_Comm_create_group.3
 man/man3/MPI_Comm_create_keyval.3
 man/man3/MPI_Comm_delete_attr.3
 man/man3/MPI_Comm_disconnect.3
 man/man3/MPI_Comm_dup.3
+man/man3/MPI_Comm_dup_with_info.3
 man/man3/MPI_Comm_f2c.3
 man/man3/MPI_Comm_free.3
 man/man3/MPI_Comm_free_keyval.3
 man/man3/MPI_Comm_get_attr.3
 man/man3/MPI_Comm_get_errhandler.3
+man/man3/MPI_Comm_get_info.3
 man/man3/MPI_Comm_get_name.3
 man/man3/MPI_Comm_get_parent.3
 man/man3/MPI_Comm_group.3
+man/man3/MPI_Comm_idup.3
 man/man3/MPI_Comm_join.3
 man/man3/MPI_Comm_rank.3
 man/man3/MPI_Comm_remote_group.3
 man/man3/MPI_Comm_remote_size.3
 man/man3/MPI_Comm_set_attr.3
 man/man3/MPI_Comm_set_errhandler.3
+man/man3/MPI_Comm_set_info.3
 man/man3/MPI_Comm_set_name.3
 man/man3/MPI_Comm_size.3
 man/man3/MPI_Comm_spawn.3
 man/man3/MPI_Comm_spawn_multiple.3
 man/man3/MPI_Comm_split.3
+man/man3/MPI_Comm_split_type.3
 man/man3/MPI_Comm_test_inter.3
+man/man3/MPI_Compare_and_swap.3
 man/man3/MPI_Dims_create.3
+man/man3/MPI_Dist_graph_create.3
+man/man3/MPI_Dist_graph_create_adjacent.3
+man/man3/MPI_Dist_graph_neighbors.3
+man/man3/MPI_Dist_graph_neighbors_count.3
 man/man3/MPI_Errhandler_create.3
 man/man3/MPI_Errhandler_free.3
 man/man3/MPI_Errhandler_get.3
@@ -254,6 +345,7 @@ man/man3/MPI_Errhandler_set.3
 man/man3/MPI_Error_class.3
 man/man3/MPI_Error_string.3
 man/man3/MPI_Exscan.3
+man/man3/MPI_Fetch_and_op.3
 man/man3/MPI_File_c2f.3
 man/man3/MPI_File_call_errhandler.3
 man/man3/MPI_File_close.3
@@ -317,9 +409,12 @@ man/man3/MPI_Free_mem.3
 man/man3/MPI_Gather.3
 man/man3/MPI_Gatherv.3
 man/man3/MPI_Get.3
+man/man3/MPI_Get_accumulate.3
 man/man3/MPI_Get_address.3
 man/man3/MPI_Get_count.3
 man/man3/MPI_Get_elements.3
+man/man3/MPI_Get_elements_x.3
+man/man3/MPI_Get_library_version.3
 man/man3/MPI_Get_processor_name.3
 man/man3/MPI_Get_version.3
 man/man3/MPI_Graph_create.3
@@ -344,11 +439,30 @@ man/man3/MPI_Group_rank.3
 man/man3/MPI_Group_size.3
 man/man3/MPI_Group_translate_ranks.3
 man/man3/MPI_Group_union.3
+man/man3/MPI_Iallgather.3
+man/man3/MPI_Iallgatherv.3
+man/man3/MPI_Iallreduce.3
+man/man3/MPI_Ialltoall.3
+man/man3/MPI_Ialltoallv.3
+man/man3/MPI_Ialltoallw.3
+man/man3/MPI_Ibarrier.3
+man/man3/MPI_Ibcast.3
 man/man3/MPI_Ibsend.3
+man/man3/MPI_Iexscan.3
+man/man3/MPI_Igather.3
+man/man3/MPI_Igatherv.3
+man/man3/MPI_Improbe.3
+man/man3/MPI_Imrecv.3
+man/man3/MPI_Ineighbor_allgather.3
+man/man3/MPI_Ineighbor_allgatherv.3
+man/man3/MPI_Ineighbor_alltoall.3
+man/man3/MPI_Ineighbor_alltoallv.3
+man/man3/MPI_Ineighbor_alltoallw.3
 man/man3/MPI_Info_c2f.3
 man/man3/MPI_Info_create.3
 man/man3/MPI_Info_delete.3
 man/man3/MPI_Info_dup.3
+man/man3/MPI_Info_env.3
 man/man3/MPI_Info_f2c.3
 man/man3/MPI_Info_free.3
 man/man3/MPI_Info_get.3
@@ -363,13 +477,26 @@ man/man3/MPI_Intercomm_create.3
 man/man3/MPI_Intercomm_merge.3
 man/man3/MPI_Iprobe.3
 man/man3/MPI_Irecv.3
+man/man3/MPI_Ireduce.3
+man/man3/MPI_Ireduce_scatter.3
+man/man3/MPI_Ireduce_scatter_block.3
 man/man3/MPI_Irsend.3
 man/man3/MPI_Is_thread_main.3
+man/man3/MPI_Iscan.3
+man/man3/MPI_Iscatter.3
+man/man3/MPI_Iscatterv.3
 man/man3/MPI_Isend.3
 man/man3/MPI_Issend.3
 man/man3/MPI_Keyval_create.3
 man/man3/MPI_Keyval_free.3
 man/man3/MPI_Lookup_name.3
+man/man3/MPI_Mprobe.3
+man/man3/MPI_Mrecv.3
+man/man3/MPI_Neighbor_allgather.3
+man/man3/MPI_Neighbor_allgatherv.3
+man/man3/MPI_Neighbor_alltoall.3
+man/man3/MPI_Neighbor_alltoallv.3
+man/man3/MPI_Neighbor_alltoallw.3
 man/man3/MPI_Op_c2f.3
 man/man3/MPI_Op_create.3
 man/man3/MPI_Op_f2c.3
@@ -384,16 +511,21 @@ man/man3/MPI_Probe.3
 man/man3/MPI_Publish_name.3
 man/man3/MPI_Put.3
 man/man3/MPI_Query_thread.3
+man/man3/MPI_Raccumulate.3
 man/man3/MPI_Recv.3
 man/man3/MPI_Recv_init.3
 man/man3/MPI_Reduce.3
 man/man3/MPI_Reduce_local.3
 man/man3/MPI_Reduce_scatter.3
+man/man3/MPI_Reduce_scatter_block.3
 man/man3/MPI_Register_datarep.3
 man/man3/MPI_Request_c2f.3
 man/man3/MPI_Request_f2c.3
 man/man3/MPI_Request_free.3
 man/man3/MPI_Request_get_status.3
+man/man3/MPI_Rget.3
+man/man3/MPI_Rget_accumulate.3
+man/man3/MPI_Rput.3
 man/man3/MPI_Rsend.3
 man/man3/MPI_Rsend_init.3
 man/man3/MPI_Scan.3
@@ -412,6 +544,7 @@ man/man3/MPI_Status_c2f.3
 man/man3/MPI_Status_f2c.3
 man/man3/MPI_Status_set_cancelled.3
 man/man3/MPI_Status_set_elements.3
+man/man3/MPI_Status_set_elements_x.3
 man/man3/MPI_Test.3
 man/man3/MPI_Test_cancelled.3
 man/man3/MPI_Testall.3
@@ -426,6 +559,7 @@ man/man3/MPI_Type_create_f90_complex.3
 man/man3/MPI_Type_create_f90_integer.3
 man/man3/MPI_Type_create_f90_real.3
 man/man3/MPI_Type_create_hindexed.3
+man/man3/MPI_Type_create_hindexed_block.3
 man/man3/MPI_Type_create_hvector.3
 man/man3/MPI_Type_create_indexed_block.3
 man/man3/MPI_Type_create_keyval.3
@@ -442,8 +576,10 @@ man/man3/MPI_Type_get_attr.3
 man/man3/MPI_Type_get_contents.3
 man/man3/MPI_Type_get_envelope.3
 man/man3/MPI_Type_get_extent.3
+man/man3/MPI_Type_get_extent_x.3
 man/man3/MPI_Type_get_name.3
 man/man3/MPI_Type_get_true_extent.3
+man/man3/MPI_Type_get_true_extent_x.3
 man/man3/MPI_Type_hindexed.3
 man/man3/MPI_Type_hvector.3
 man/man3/MPI_Type_indexed.3
@@ -452,6 +588,7 @@ man/man3/MPI_Type_match_size.3
 man/man3/MPI_Type_set_attr.3
 man/man3/MPI_Type_set_name.3
 man/man3/MPI_Type_size.3
+man/man3/MPI_Type_size_x.3
 man/man3/MPI_Type_struct.3
 man/man3/MPI_Type_ub.3
 man/man3/MPI_Type_vector.3
@@ -462,121 +599,315 @@ man/man3/MPI_Wait.3
 man/man3/MPI_Waitall.3
 man/man3/MPI_Waitany.3
 man/man3/MPI_Waitsome.3
+man/man3/MPI_Win_allocate.3
+man/man3/MPI_Win_allocate_shared.3
+man/man3/MPI_Win_attach.3
 man/man3/MPI_Win_c2f.3
 man/man3/MPI_Win_call_errhandler.3
 man/man3/MPI_Win_complete.3
 man/man3/MPI_Win_create.3
+man/man3/MPI_Win_create_dynamic.3
 man/man3/MPI_Win_create_errhandler.3
 man/man3/MPI_Win_create_keyval.3
 man/man3/MPI_Win_delete_attr.3
+man/man3/MPI_Win_detach.3
 man/man3/MPI_Win_f2c.3
 man/man3/MPI_Win_fence.3
+man/man3/MPI_Win_flush.3
+man/man3/MPI_Win_flush_all.3
+man/man3/MPI_Win_flush_local.3
+man/man3/MPI_Win_flush_local_all.3
 man/man3/MPI_Win_free.3
 man/man3/MPI_Win_free_keyval.3
 man/man3/MPI_Win_get_attr.3
 man/man3/MPI_Win_get_errhandler.3
 man/man3/MPI_Win_get_group.3
+man/man3/MPI_Win_get_info.3
 man/man3/MPI_Win_get_name.3
 man/man3/MPI_Win_lock.3
+man/man3/MPI_Win_lock_all.3
 man/man3/MPI_Win_post.3
 man/man3/MPI_Win_set_attr.3
 man/man3/MPI_Win_set_errhandler.3
+man/man3/MPI_Win_set_info.3
 man/man3/MPI_Win_set_name.3
+man/man3/MPI_Win_shared_query.3
 man/man3/MPI_Win_start.3
+man/man3/MPI_Win_sync.3
 man/man3/MPI_Win_test.3
 man/man3/MPI_Win_unlock.3
+man/man3/MPI_Win_unlock_all.3
 man/man3/MPI_Win_wait.3
 man/man3/MPI_Wtick.3
 man/man3/MPI_Wtime.3
 man/man3/OpenMPI.3
+${PLIST.oshmem}man/man3/intro_shmem.3
+${PLIST.oshmem}man/man3/_my_pe.3
+${PLIST.oshmem}man/man3/_num_pes.3
+${PLIST.oshmem}man/man3/OpenSHMEM.3
+${PLIST.oshmem}man/man3/shfree.3
+${PLIST.oshmem}man/man3/shmalloc.3
+${PLIST.oshmem}man/man3/shmem_addr_accessible.3
+${PLIST.oshmem}man/man3/shmemalign.3
+${PLIST.oshmem}man/man3/shmem_barrier.3
+${PLIST.oshmem}man/man3/shmem_barrier_all.3
+${PLIST.oshmem}man/man3/shmem_broadcast32.3
+${PLIST.oshmem}man/man3/shmem_broadcast64.3
+${PLIST.oshmem}man/man3/shmem_char_g.3
+${PLIST.oshmem}man/man3/shmem_char_get.3
+${PLIST.oshmem}man/man3/shmem_char_p.3
+${PLIST.oshmem}man/man3/shmem_char_put.3
+${PLIST.oshmem}man/man3/shmem_clear_cache_inv.3
+${PLIST.oshmem}man/man3/shmem_clear_cache_line_inv.3
+${PLIST.oshmem}man/man3/shmem_clear_lock.3
+${PLIST.oshmem}man/man3/shmem_collect32.3
+${PLIST.oshmem}man/man3/shmem_collect64.3
+${PLIST.oshmem}man/man3/shmem_complexd_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_complexd_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_complexf_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_complexf_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_double_g.3
+${PLIST.oshmem}man/man3/shmem_double_get.3
+${PLIST.oshmem}man/man3/shmem_double_iget.3
+${PLIST.oshmem}man/man3/shmem_double_iput.3
+${PLIST.oshmem}man/man3/shmem_double_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_double_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_double_p.3
+${PLIST.oshmem}man/man3/shmem_double_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_double_put.3
+${PLIST.oshmem}man/man3/shmem_double_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_double_swap.3
+${PLIST.oshmem}man/man3/shmem_fcollect32.3
+${PLIST.oshmem}man/man3/shmem_fcollect64.3
+${PLIST.oshmem}man/man3/shmem_fence.3
+${PLIST.oshmem}man/man3/shmem_float_g.3
+${PLIST.oshmem}man/man3/shmem_float_get.3
+${PLIST.oshmem}man/man3/shmem_float_iget.3
+${PLIST.oshmem}man/man3/shmem_float_iput.3
+${PLIST.oshmem}man/man3/shmem_float_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_float_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_float_p.3
+${PLIST.oshmem}man/man3/shmem_float_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_float_put.3
+${PLIST.oshmem}man/man3/shmem_float_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_float_swap.3
+${PLIST.oshmem}man/man3/shmem_get128.3
+${PLIST.oshmem}man/man3/shmem_get32.3
+${PLIST.oshmem}man/man3/shmem_get64.3
+${PLIST.oshmem}man/man3/shmem_getmem.3
+${PLIST.oshmem}man/man3/shmem_iget128.3
+${PLIST.oshmem}man/man3/shmem_iget32.3
+${PLIST.oshmem}man/man3/shmem_iget64.3
+${PLIST.oshmem}man/man3/shmem_int_add.3
+${PLIST.oshmem}man/man3/shmem_int_and_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_cswap.3
+${PLIST.oshmem}man/man3/shmem_int_fadd.3
+${PLIST.oshmem}man/man3/shmem_int_finc.3
+${PLIST.oshmem}man/man3/shmem_int_g.3
+${PLIST.oshmem}man/man3/shmem_int_get.3
+${PLIST.oshmem}man/man3/shmem_int_iget.3
+${PLIST.oshmem}man/man3/shmem_int_inc.3
+${PLIST.oshmem}man/man3/shmem_int_iput.3
+${PLIST.oshmem}man/man3/shmem_int_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_or_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_p.3
+${PLIST.oshmem}man/man3/shmem_int_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_put.3
+${PLIST.oshmem}man/man3/shmem_int_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_int_swap.3
+${PLIST.oshmem}man/man3/shmem_int_wait.3
+${PLIST.oshmem}man/man3/shmem_int_wait_until.3
+${PLIST.oshmem}man/man3/shmem_int_xor_to_all.3
+${PLIST.oshmem}man/man3/shmem_iput128.3
+${PLIST.oshmem}man/man3/shmem_iput32.3
+${PLIST.oshmem}man/man3/shmem_iput64.3
+${PLIST.oshmem}man/man3/shmem_long_add.3
+${PLIST.oshmem}man/man3/shmem_long_and_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_cswap.3
+${PLIST.oshmem}man/man3/shmem_longdouble_g.3
+${PLIST.oshmem}man/man3/shmem_longdouble_get.3
+${PLIST.oshmem}man/man3/shmem_longdouble_iget.3
+${PLIST.oshmem}man/man3/shmem_longdouble_iput.3
+${PLIST.oshmem}man/man3/shmem_longdouble_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_longdouble_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_longdouble_p.3
+${PLIST.oshmem}man/man3/shmem_longdouble_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_longdouble_put.3
+${PLIST.oshmem}man/man3/shmem_long_fadd.3
+${PLIST.oshmem}man/man3/shmem_long_finc.3
+${PLIST.oshmem}man/man3/shmem_long_g.3
+${PLIST.oshmem}man/man3/shmem_long_get.3
+${PLIST.oshmem}man/man3/shmem_long_iget.3
+${PLIST.oshmem}man/man3/shmem_long_inc.3
+${PLIST.oshmem}man/man3/shmem_long_iput.3
+${PLIST.oshmem}man/man3/shmem_longlong_add.3
+${PLIST.oshmem}man/man3/shmem_longlong_and_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_cswap.3
+${PLIST.oshmem}man/man3/shmem_longlong_fadd.3
+${PLIST.oshmem}man/man3/shmem_longlong_finc.3
+${PLIST.oshmem}man/man3/shmem_longlong_g.3
+${PLIST.oshmem}man/man3/shmem_longlong_get.3
+${PLIST.oshmem}man/man3/shmem_longlong_iget.3
+${PLIST.oshmem}man/man3/shmem_longlong_inc.3
+${PLIST.oshmem}man/man3/shmem_longlong_iput.3
+${PLIST.oshmem}man/man3/shmem_longlong_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_or_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_p.3
+${PLIST.oshmem}man/man3/shmem_longlong_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_put.3
+${PLIST.oshmem}man/man3/shmem_longlong_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_longlong_swap.3
+${PLIST.oshmem}man/man3/shmem_longlong_wait.3
+${PLIST.oshmem}man/man3/shmem_longlong_wait_until.3
+${PLIST.oshmem}man/man3/shmem_longlong_xor_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_or_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_p.3
+${PLIST.oshmem}man/man3/shmem_long_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_put.3
+${PLIST.oshmem}man/man3/shmem_long_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_long_swap.3
+${PLIST.oshmem}man/man3/shmem_long_wait.3
+${PLIST.oshmem}man/man3/shmem_long_wait_until.3
+${PLIST.oshmem}man/man3/shmem_long_xor_to_all.3
+${PLIST.oshmem}man/man3/shmem_pe_accessible.3
+${PLIST.oshmem}man/man3/shmem_ptr.3
+${PLIST.oshmem}man/man3/shmem_put128.3
+${PLIST.oshmem}man/man3/shmem_put32.3
+${PLIST.oshmem}man/man3/shmem_put64.3
+${PLIST.oshmem}man/man3/shmem_putmem.3
+${PLIST.oshmem}man/man3/shmem_quiet.3
+${PLIST.oshmem}man/man3/shmem_set_cache_inv.3
+${PLIST.oshmem}man/man3/shmem_set_cache_line_inv.3
+${PLIST.oshmem}man/man3/shmem_set_lock.3
+${PLIST.oshmem}man/man3/shmem_short_and_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_g.3
+${PLIST.oshmem}man/man3/shmem_short_get.3
+${PLIST.oshmem}man/man3/shmem_short_iget.3
+${PLIST.oshmem}man/man3/shmem_short_iput.3
+${PLIST.oshmem}man/man3/shmem_short_max_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_min_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_or_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_p.3
+${PLIST.oshmem}man/man3/shmem_short_prod_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_put.3
+${PLIST.oshmem}man/man3/shmem_short_sum_to_all.3
+${PLIST.oshmem}man/man3/shmem_short_wait.3
+${PLIST.oshmem}man/man3/shmem_short_wait_until.3
+${PLIST.oshmem}man/man3/shmem_short_xor_to_all.3
+${PLIST.oshmem}man/man3/shmem_swap.3
+${PLIST.oshmem}man/man3/shmem_test_lock.3
+${PLIST.oshmem}man/man3/shmem_udcflush.3
+${PLIST.oshmem}man/man3/shmem_udcflush_line.3
+${PLIST.oshmem}man/man3/shmem_wait.3
+${PLIST.oshmem}man/man3/shmem_wait_until.3
+${PLIST.oshmem}man/man3/shrealloc.3
+${PLIST.oshmem}man/man3/start_pes.3
 man/man7/ompi_crcp.7
 man/man7/opal_crs.7
 man/man7/orte_filem.7
 man/man7/orte_hosts.7
 man/man7/orte_snapc.7
-${PLIST.openib}share/openmpi/amca-param-sets/btl-openib-benchmark
+man/man7/orte_sstore.7
 share/openmpi/amca-param-sets/example.conf
 ${PLIST.linux}share/openmpi/doc/COPYRIGHT-ptmalloc2.txt
 share/openmpi/examples/openmpi-default-hostfile
 share/openmpi/examples/openmpi-mca-params.conf
 share/openmpi/examples/openmpi-totalview.tcl
-share/openmpi/help-coll-sync.txt
+share/openmpi/help-btl-vader.txt
 share/openmpi/help-dash-host.txt
+share/openmpi/help-db-base.txt
+share/openmpi/help-errmgr-base.txt
 share/openmpi/help-ess-base.txt
 share/openmpi/help-hostfile.txt
 share/openmpi/help-mca-base.txt
 share/openmpi/help-mca-bml-r2.txt
 share/openmpi/help-mca-coll-base.txt
 share/openmpi/help-mca-op-base.txt
-share/openmpi/help-mca-param.txt
+share/openmpi/help-mca-var.txt
 share/openmpi/help-mpi-api.txt
 share/openmpi/help-mpi-btl-base.txt
-${PLIST.openib}share/openmpi/help-mpi-btl-openib-cpc-base.txt
-${PLIST.openib}share/openmpi/help-mpi-btl-openib.txt
 share/openmpi/help-mpi-btl-sm.txt
 share/openmpi/help-mpi-btl-tcp.txt
+share/openmpi/help-mpi-coll-ml.txt
 share/openmpi/help-mpi-coll-sm.txt
 share/openmpi/help-mpi-common-sm.txt
 share/openmpi/help-mpi-errors.txt
 share/openmpi/help-mpi-pml-bfo.txt
-share/openmpi/help-mpi-pml-csum.txt
 share/openmpi/help-mpi-pml-ob1.txt
 share/openmpi/help-mpi-runtime.txt
 share/openmpi/help-mpool-base.txt
-share/openmpi/help-odls-default.txt
 share/openmpi/help-ompi-crcp-base.txt
 share/openmpi/help-ompi-dpm-base.txt
 share/openmpi/help-ompi-dpm-orte.txt
-share/openmpi/help-ompi-probe.txt
-share/openmpi/help-ompi-profiler.txt
 share/openmpi/help-ompi-pubsub-orte.txt
-share/openmpi/help-ompi-server.txt
-share/openmpi/help-ompi_info.txt
+share/openmpi/help-oob-base.txt
 share/openmpi/help-oob-tcp.txt
-share/openmpi/help-opal-carto-file.txt
+share/openmpi/help-opal-compress-base.txt
+share/openmpi/help-opal-compress-bzip.txt
+share/openmpi/help-opal-compress-gzip.txt
 share/openmpi/help-opal-crs-base.txt
 share/openmpi/help-opal-crs-none.txt
-share/openmpi/help-opal-maffinity-hwloc.txt
+share/openmpi/help-opal-hwloc-base.txt
 ${PLIST.linux}share/openmpi/help-opal-memory-linux.txt
 share/openmpi/help-opal-runtime.txt
 share/openmpi/help-opal-shmem-mmap.txt
-${PLIST.shm}share/openmpi/help-opal-shmem-posix.txt
+share/openmpi/help-opal-shmem-posix.txt
 share/openmpi/help-opal-shmem-sysv.txt
 share/openmpi/help-opal-util.txt
 share/openmpi/help-opal-wrapper.txt
+share/openmpi/help-opal_info.txt
 share/openmpi/help-orte-clean.txt
 share/openmpi/help-orte-filem-base.txt
-share/openmpi/help-orte-filem-rsh.txt
-share/openmpi/help-orte-iof.txt
-share/openmpi/help-orte-notifier-command.txt
-${PLIST.notifier-smtp}share/openmpi/help-orte-notifier-smtp.txt
+share/openmpi/help-orte-filem-raw.txt
+share/openmpi/help-orte-info.txt
 share/openmpi/help-orte-odls-base.txt
+share/openmpi/help-orte-odls-default.txt
 share/openmpi/help-orte-ps.txt
 share/openmpi/help-orte-rmaps-base.txt
-share/openmpi/help-orte-rmaps-lb.txt
+share/openmpi/help-orte-rmaps-md.txt
+share/openmpi/help-orte-rmaps-ppr.txt
 share/openmpi/help-orte-rmaps-resilient.txt
 share/openmpi/help-orte-rmaps-rr.txt
 share/openmpi/help-orte-rmaps-seq.txt
-share/openmpi/help-orte-rmaps-topo.txt
 share/openmpi/help-orte-runtime.txt
+share/openmpi/help-orte-server.txt
 share/openmpi/help-orte-snapc-base.txt
+share/openmpi/help-orte-sstore-base.txt
 share/openmpi/help-orte-top.txt
 share/openmpi/help-orted.txt
 share/openmpi/help-orterun.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-info.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-memheap.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-spml-yoda.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-sshmem-mmap.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-sshmem-sysv.txt
+${PLIST.oshmem}share/openmpi/help-oshmem-sshmem.txt
 share/openmpi/help-plm-base.txt
 share/openmpi/help-plm-rsh.txt
 share/openmpi/help-ras-base.txt
 ${PLIST.sge}share/openmpi/help-ras-gridengine.txt
+share/openmpi/help-ras-simulator.txt
 share/openmpi/help-regex.txt
 share/openmpi/help-rmaps_rank_file.txt
-${PLIST.openib}share/openmpi/mca-btl-openib-device-params.ini
+share/openmpi/help-sec-base.txt
+${PLIST.oshmem}share/openmpi/help-shmem-api.txt
+${PLIST.oshmem}share/openmpi/help-shmem-runtime.txt
+share/openmpi/help-state-staged-hnp.txt
+share/openmpi/mca-coll-ml.config
 share/openmpi/mpiCC-wrapper-data.txt
 share/openmpi/mpic++-wrapper-data.txt
 share/openmpi/mpicc-wrapper-data.txt
 share/openmpi/mpicxx-wrapper-data.txt
 share/openmpi/mpif77-wrapper-data.txt
 share/openmpi/mpif90-wrapper-data.txt
+share/openmpi/mpifort-wrapper-data.txt
 share/openmpi/openmpi-valgrind.supp
-share/openmpi/orteCC-wrapper-data.txt
-share/openmpi/ortec++-wrapper-data.txt
 share/openmpi/ortecc-wrapper-data.txt
+${PLIST.oshmem}share/openmpi/oshcc-wrapper-data.txt
+${PLIST.oshmem}share/openmpi/oshfort-wrapper-data.txt
+${PLIST.oshmem}share/openmpi/shmemcc-wrapper-data.txt
+${PLIST.oshmem}share/openmpi/shmemfort-wrapper-data.txt

parallel/openmpi/distinfo

@@ -1,9 +1,13 @@
-$NetBSD: distinfo,v 1.13 2013/02/24 01:22:36 asau Exp $
+$NetBSD: distinfo,v 1.17 2016/02/28 19:47:41 joerg Exp $
 
-SHA1 (openmpi-1.6.4.tar.bz2) = 38095d3453519177272f488d5058a98f7ebdbf10
-RMD160 (openmpi-1.6.4.tar.bz2) = 6abcb4ef5de3da00c23bcad521b66e1774675890
-Size (openmpi-1.6.4.tar.bz2) = 10869229 bytes
+SHA1 (openmpi-1.10.1.tar.bz2) = caf6885f323a38b9c106a7815711313843409478
+RMD160 (openmpi-1.10.1.tar.bz2) = 70de0da1f31793333b51eda328a18c01c4ffa3c0
+SHA512 (openmpi-1.10.1.tar.bz2) = 2ebdb6ca29d937bdada25d56b162cddceeed5256a4971b990ac8093e31de931473eb3aff3d18168d2c407b38ec0250b508d0b393ec677288adedb9b5156eaf15
+Size (openmpi-1.10.1.tar.bz2) = 13210778 bytes
 SHA1 (patch-aa) = 6fa20775c6e2abae7c9a2ae858dbb941652beab8
-SHA1 (patch-ai) = 95d699d343a7df8d768e78a235036c842c24e2d2
-SHA1 (patch-aj) = 1408114e5fc07d5b0df3e9368b6d2c5b85f85991
-SHA1 (patch-ak) = d42271d1c6adeb5e9425cc6a183f5308c74dea59
+SHA1 (patch-ai) = 5ddce5ee190ac7bf6964176e23c0a6e624c8c1dd
+SHA1 (patch-aj) = 547fa12b56bd5fe4c4b58d3558d78773bd9dc5c2
+SHA1 (patch-ak) = f79e69fc02510de8da3834729f471799e175bb9c
+SHA1 (patch-config_opal__setup__wrappers.m4) = c3fe3cb5ff7cedcb5c847f25eea129d4299dd5d2
+SHA1 (patch-configure) = 8717730bd4958fff225d64f34d10dc70a1bc2d92
+SHA1 (patch-ompi_mpi_java_java_Makefile.in) = bd61f02f56e03af9799d2ba86d66c1ded35f62f4

parallel/openmpi/options.mk

@@ -1,7 +1,7 @@
-# $NetBSD: options.mk,v 1.8 2015/01/15 20:26:47 dholland Exp $
+# $NetBSD: options.mk,v 1.9 2015/12/13 06:49:01 markd Exp $
 
 PKG_OPTIONS_VAR=	PKG_OPTIONS.openmpi
-PKG_SUPPORTED_OPTIONS=	debug f90 sge
+PKG_SUPPORTED_OPTIONS=	debug f90 java sge
 
 .include "../../mk/bsd.options.mk"
 
@@ -9,7 +9,7 @@ PKG_SUPPORTED_OPTIONS=	debug f90 sge
 CONFIGURE_ARGS+=	--enable-debug
 .endif
 
-PLIST_VARS+=		f90 sge
+PLIST_VARS+=		f90 java sge
 
 .if !empty(PKG_OPTIONS:Mf90)
 GCC_REQD+=		4.7
@@ -28,6 +28,13 @@ SUBST_SED.f90+=		-e 's,^linker_flags=,linker_flags= -L${GCCDIR}/lib ,'
 CONFIGURE_ARGS+=	--disable-mpi-f90
 .endif
 
+.if !empty(PKG_OPTIONS:Mjava)
+CONFIGURE_ARGS+=	--enable-mpi-java
+PLIST.java=		yes
+.include "../../mk/java-vm.mk"
+.else
+CONFIGURE_ARGS+=	--disable-mpi-java
+.endif
 
 .if !empty(PKG_OPTIONS:Msge)
 CONFIGURE_ARGS+=        --with-sge

parallel/openmpi/patches/patch-ai

@@ -1,18 +1,16 @@
-$NetBSD: patch-ai,v 1.4 2012/10/17 23:27:35 asau Exp $
+$NetBSD: patch-ai,v 1.5 2015/12/12 22:41:19 asau Exp $
 
-Install configuration files into example directory.
-
---- orte/etc/Makefile.in.orig	2012-08-22 14:26:19.000000000 +0000
+--- orte/etc/Makefile.in.orig	2015-06-17 19:57:45.000000000 +0000
 +++ orte/etc/Makefile.in
-@@ -1085,6 +1085,7 @@ sbindir = @sbindir@
- sharedstatedir = @sharedstatedir@
+@@ -1451,6 +1451,7 @@ spml_ikrit_LDFLAGS = @spml_ikrit_LDFLAGS
+ spml_ikrit_LIBS = @spml_ikrit_LIBS@
  srcdir = @srcdir@
  sysconfdir = @sysconfdir@
 +sysconfexampledir = $(pkgdatadir)/examples
- sysinfo_solaris_CFLAGS = @sysinfo_solaris_CFLAGS@
- sysinfo_solaris_CPPFLAGS = @sysinfo_solaris_CPPFLAGS@
- sysinfo_solaris_LDFLAGS = @sysinfo_solaris_LDFLAGS@
-@@ -1303,19 +1304,19 @@ uninstall-am: uninstall-local
+ target = @target@
+ target_alias = @target_alias@
+ target_cpu = @target_cpu@
+@@ -1667,19 +1668,19 @@ uninstall-am: uninstall-local
  # details why the mkdir is in install-data-local.
  
  install-data-local:
@@ -37,7 +35,7 @@ Install configuration files into example directory.
  	  fi; \
  	done
  
-@@ -1326,11 +1327,11 @@ install-data-local:
+@@ -1690,11 +1691,11 @@ install-data-local:
  uninstall-local:
  	@ p="$(orte_config_files)"; \
  	for file in $$p; do \

parallel/openmpi/patches/patch-aj

@@ -1,18 +1,18 @@
-$NetBSD: patch-aj,v 1.3 2012/10/17 23:27:35 asau Exp $
+$NetBSD: patch-aj,v 1.4 2015/12/12 22:41:19 asau Exp $
 
 Install configuration files into example directory.
 
---- opal/etc/Makefile.in.orig	2012-08-22 14:25:33.000000000 +0000
-+++ opal/etc/Makefile.in
-@@ -35,6 +35,7 @@
- #
- VPATH = @srcdir@
+--- opal/etc/Makefile.in.orig	2013-01-15 14:43:13.000000000 +0100
++++ opal/etc/Makefile.in	2013-01-24 12:34:41.090709828 +0100
+@@ -51,6 +51,7 @@
+     test $$am__dry = yes; \
+   }
  pkgdatadir = $(datadir)/@PACKAGE@
 +sysconfexampledir = $(pkgdatadir)/examples
  pkgincludedir = $(includedir)/@PACKAGE@
  pkglibdir = $(libdir)/@PACKAGE@
  pkglibexecdir = $(libexecdir)/@PACKAGE@
-@@ -1302,24 +1303,24 @@ uninstall-am: uninstall-local
+@@ -1535,24 +1536,24 @@
  # details why the mkdir is in install-data-local.
  
  install-data-local:
@@ -44,7 +44,7 @@ Install configuration files into example directory.
  	        fi; \
  	    done \
          fi;
-@@ -1331,11 +1332,11 @@ install-data-local:
+@@ -1564,11 +1565,11 @@
  uninstall-local:
  	@ p="$(opal_config_files)"; \
  	for file in $$p; do \

parallel/openmpi/patches/patch-ak

@@ -1,18 +1,18 @@
-$NetBSD: patch-ak,v 1.3 2012/10/17 23:27:35 asau Exp $
+$NetBSD: patch-ak,v 1.4 2015/12/12 22:41:19 asau Exp $
 
 Install configuration files into example directory.
 
---- ompi/etc/Makefile.in.orig	2012-08-22 14:24:34.000000000 +0000
-+++ ompi/etc/Makefile.in
-@@ -35,6 +35,7 @@
- #
- VPATH = @srcdir@
+--- ompi/etc/Makefile.in.orig	2013-01-15 14:41:30.000000000 +0100
++++ ompi/etc/Makefile.in	2013-01-24 12:36:01.150707935 +0100
+@@ -51,6 +51,7 @@
+     test $$am__dry = yes; \
+   }
  pkgdatadir = $(datadir)/@PACKAGE@
 +sysconfexampledir = $(pkgdatadir)/examples
  pkgincludedir = $(includedir)/@PACKAGE@
  pkglibdir = $(libdir)/@PACKAGE@
  pkglibexecdir = $(libexecdir)/@PACKAGE@
-@@ -1303,19 +1304,19 @@ uninstall-am: uninstall-local
+@@ -1536,19 +1537,19 @@
  # details why the mkdir is in install-data-local.
  
  install-data-local:
@@ -37,7 +37,7 @@ Install configuration files into example directory.
  	  fi; \
  	done
  
-@@ -1326,11 +1327,11 @@ install-data-local:
+@@ -1559,11 +1560,11 @@
  uninstall-local:
  	@ p="$(ompi_config_files)"; \
  	for file in $$p; do \

parallel/openmpi/patches/patch-config_opal__setup__wrappers.m4

@@ -0,0 +1,17 @@
+$NetBSD: patch-config_opal__setup__wrappers.m4,v 1.1 2016/02/28 19:47:41 joerg Exp $
+
+Do not second guess the compiler's choice of DT_RPATH vs DT_RUNPATH.
+
+--- config/opal_setup_wrappers.m4.orig	2016-02-24 13:18:55.229667898 +0000
++++ config/opal_setup_wrappers.m4
+@@ -177,10 +177,6 @@ EOF
+            AC_MSG_RESULT([yes (no extra flags needed)])])
+ 
+     OPAL_VAR_SCOPE_POP
+-
+-    # If we found RPATH support, check for RUNPATH support, too
+-    AS_IF([test "$WRAPPER_RPATH_SUPPORT" = "rpath"],
+-          [OPAL_SETUP_RUNPATH])
+ ])
+ 
+ # Check to see if the linker supports the DT_RUNPATH flags via

parallel/openmpi/patches/patch-configure

@@ -0,0 +1,125 @@
+$NetBSD: patch-configure,v 1.1 2016/02/28 19:47:41 joerg Exp $
+
+--- configure.orig	2016-02-24 13:44:02.424420285 +0000
++++ configure
+@@ -307902,6 +307902,7 @@ fi
+ 
+ 
+     # Unwind the index
++    
+     ompi_scope_index=`expr $ompi_scope_index - 1`
+     ompi_scope_test=`expr $ompi_scope_index \> 0`
+     if test "$ompi_scope_test" = "0"; then
+@@ -307922,112 +307923,6 @@ $as_echo "$as_me: WARNING: This usually 
+     done
+ 
+ 
+-    # If we found RPATH support, check for RUNPATH support, too
+-    if test "$WRAPPER_RPATH_SUPPORT" = "rpath"; then :
+-
+-
+-
+-    # Is the private index set?  If not, set it.
+-    if test "x$ompi_scope_index" = "x"; then
+-        ompi_scope_index=1
+-    fi
+-
+-    # First, check to see if any of these variables are already set.
+-    # This is a simple sanity check to ensure we're not already
+-    # overwriting pre-existing variables (that have a non-empty
+-    # value).  It's not a perfect check, but at least it's something.
+-    for ompi_var in LDFLAGS_save; do
+-        ompi_str="ompi_str=\"\$$ompi_var\""
+-        eval $ompi_str
+-
+-        if test "x$ompi_str" != "x"; then
+-            { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: Found configure shell variable clash!" >&5
+-$as_echo "$as_me: WARNING: Found configure shell variable clash!" >&2;}
+-            { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: OPAL_VAR_SCOPE_PUSH called on \"$ompi_var\"," >&5
+-$as_echo "$as_me: WARNING: OPAL_VAR_SCOPE_PUSH called on \"$ompi_var\"," >&2;}
+-            { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: but it is already defined with value \"$ompi_str\"" >&5
+-$as_echo "$as_me: WARNING: but it is already defined with value \"$ompi_str\"" >&2;}
+-            { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: This usually indicates an error in configure." >&5
+-$as_echo "$as_me: WARNING: This usually indicates an error in configure." >&2;}
+-            as_fn_error $? "Cannot continue" "$LINENO" 5
+-        fi
+-    done
+-
+-    # Ok, we passed the simple sanity check.  Save all these names so
+-    # that we can unset them at the end of the scope.
+-    ompi_str="ompi_scope_$ompi_scope_index=\"LDFLAGS_save\""
+-    eval $ompi_str
+-    unset ompi_str
+-
+-    env | grep ompi_scope
+-    ompi_scope_index=`expr $ompi_scope_index + 1`
+-
+-
+-    { $as_echo "$as_me:${as_lineno-$LINENO}: checking if linker supports RUNPATH" >&5
+-$as_echo_n "checking if linker supports RUNPATH... " >&6; }
+-    # Set the output in $runpath_args
+-    runpath_args=
+-    LDFLAGS_save=$LDFLAGS
+-    LDFLAGS="$LDFLAGS -Wl,--enable-new-dtags"
+-    ac_ext=c
+-ac_cpp='$CPP $CPPFLAGS'
+-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+-
+-    cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-int
+-main ()
+-{
+-return 7;
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-if ac_fn_c_try_link "$LINENO"; then :
+-  WRAPPER_RPATH_SUPPORT=runpath
+-                    runpath_args="-Wl,--enable-new-dtags"
+-                    { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes (-Wl,--enable-new-dtags)" >&5
+-$as_echo "yes (-Wl,--enable-new-dtags)" >&6; }
+-else
+-  { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+-$as_echo "no" >&6; }
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext conftest.$ac_ext
+-    ac_ext=c
+-ac_cpp='$CPP $CPPFLAGS'
+-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+-
+-    LDFLAGS=$LDFLAGS_save
+-
+-
+-    # Unwind the index
+-    ompi_scope_index=`expr $ompi_scope_index - 1`
+-    ompi_scope_test=`expr $ompi_scope_index \> 0`
+-    if test "$ompi_scope_test" = "0"; then
+-        { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: OPAL_VAR_SCOPE_POP popped too many OMPI configure scopes." >&5
+-$as_echo "$as_me: WARNING: OPAL_VAR_SCOPE_POP popped too many OMPI configure scopes." >&2;}
+-        { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: This usually indicates an error in configure." >&5
+-$as_echo "$as_me: WARNING: This usually indicates an error in configure." >&2;}
+-        as_fn_error $? "Cannot continue" "$LINENO" 5
+-    fi
+-
+-    # Get the variable names from that index
+-    ompi_str="ompi_str=\"\$ompi_scope_$ompi_scope_index\""
+-    eval $ompi_str
+-
+-    # Iterate over all the variables and unset them all
+-    for ompi_var in $ompi_str; do
+-        unset $ompi_var
+-    done
+-
+-
+-fi
+ 
+ fi
+     if test "$enable_wrapper_rpath" = "yes" -a "$WRAPPER_RPATH_SUPPORT" = "disabled"; then :

parallel/openmpi/patches/patch-ompi_mpi_java_java_Makefile.in

@@ -0,0 +1,15 @@
+$NetBSD: patch-ompi_mpi_java_java_Makefile.in,v 1.1 2015/12/13 06:49:01 markd Exp $
+
+Don't install jdocs - its dependent on particular javadoc version
+
+--- ompi/mpi/java/java/Makefile.in.orig	2015-09-16 10:13:10.000000000 +0000
++++ ompi/mpi/java/java/Makefile.in
+@@ -2017,7 +2017,7 @@ uninstall-am: uninstall-javaDATA uninsta
+ @OMPI_WANT_JAVA_BINDINGS_TRUE@jdoc-uninstall:
+ @OMPI_WANT_JAVA_BINDINGS_TRUE@	-rm -rf $(DESTDIR)$(docdir)/javadoc
+ 
+-@OMPI_WANT_JAVA_BINDINGS_TRUE@install-data-hook: jdoc-install
++@OMPI_WANT_JAVA_BINDINGS_TRUE@install-data-hook: 
+ @OMPI_WANT_JAVA_BINDINGS_TRUE@uninstall-local: jdoc-uninstall
+ 
+ # Can only put *files* in CLEANFILES; need to remove the generated doc

parallel/openpa/distinfo

@@ -1,6 +1,7 @@
-$NetBSD: distinfo,v 1.3 2013/03/17 14:43:48 asau Exp $
+$NetBSD: distinfo,v 1.4 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (openpa-1.0.4.tar.gz) = 0c714376245a7bf0d5c885d129fb301e5431a3af
 RMD160 (openpa-1.0.4.tar.gz) = f0a34b769be9d91db3ebb18ebbb828757748f142
+SHA512 (openpa-1.0.4.tar.gz) = 3c969c8dcc6eb2cab9312af72b111f235d10c298c2e1ec8a5a2f2cbdd284393d511321f38cda81576b2a4bc8c8ea2af93ed97b6cfc859a8c77a5a8e8f3a7dec2
 Size (openpa-1.0.4.tar.gz) = 378763 bytes
 SHA1 (patch-src_opa__primitives.c) = 7a33197519270ef4ba2a922376b50ccc1a5eedfd

parallel/p5-Parallel-Pvm/Makefile

@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.25 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.26 2016/06/08 19:24:17 wiz Exp $
 #
 
 DISTNAME=	Parallel-Pvm-1.4.0
 PKGNAME=	p5-${DISTNAME}
-PKGREVISION=	7
+PKGREVISION=	8
 CATEGORIES=	parallel perl5
 MASTER_SITES=	${MASTER_SITE_PERL_CPAN:=Parallel/}
 

parallel/p5-Parallel-Pvm/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.3 2008/08/11 13:48:22 he Exp $
+$NetBSD: distinfo,v 1.4 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (Parallel-Pvm-1.4.0.tar.gz) = d6dee207dbe5182b74c4cf90270a60520cbfcff2
 RMD160 (Parallel-Pvm-1.4.0.tar.gz) = facb45d4539976cb582a371280cc04f0a26959d2
+SHA512 (Parallel-Pvm-1.4.0.tar.gz) = fa26736a890af73679c5ef35040b3c5904e9360e7a157903c47e6b445f23059247a77e7c13e60b28c1ac7350ca1fe7a2458e0b82a20efdd673c2e0145e03288f
 Size (Parallel-Pvm-1.4.0.tar.gz) = 19422 bytes

parallel/paexec/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.9 2014/08/14 06:15:54 cheusov Exp $
+$NetBSD: distinfo,v 1.10 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (paexec-1.0.1.tar.gz) = a86ed9b5cd7bf793ea92bfdd4360a96ec4a5a961
 RMD160 (paexec-1.0.1.tar.gz) = d54f46fdd093a5da90d506dc7453ae1cebd28038
+SHA512 (paexec-1.0.1.tar.gz) = 6178ed5560d0657469a45a818e161234e57db182781824b11b02f6d31c9137638e4f001bc69af5fcea84dc3ba6b97e2fb876cc40a79fb0b7a8f610969a5d4a44
 Size (paexec-1.0.1.tar.gz) = 141777 bytes

parallel/parallel/Makefile

@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.10 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.12 2016/09/13 09:41:29 fhajny Exp $
 #
 
-DISTNAME=	parallel-20130122
-PKGREVISION=	3
+DISTNAME=	parallel-20160822
 CATEGORIES=	parallel
 MASTER_SITES=	${MASTER_SITE_GNU:=parallel/}
 EXTRACT_SUFX=	.tar.bz2
@@ -15,6 +14,7 @@ LICENSE=	gnu-gpl-v3
 USE_TOOLS+=	perl:run pod2man pod2html
 
 REPLACE_PERL+=	src/parallel src/niceload src/sem src/sem.pod src/sql
+REPLACE_SH+=	src/env_parallel
 
 GNU_CONFIGURE=	yes
 USE_LANGUAGES=	# none
@@ -22,6 +22,8 @@ USE_LANGUAGES=	# none
 DOCDIR=		${PREFIX}/share/doc/parallel
 DOCFILES=	NEWS README COPYING
 
+CHECK_INTERPRETER_SKIP+=	bin/env_parallel.*
+
 post-install:
 .for i in ${DOCFILES}
 	${INSTALL_DATA} ${WRKSRC}/${i} ${DESTDIR}${DOCDIR}/

parallel/parallel/PLIST

@@ -1,20 +1,44 @@
-@comment $NetBSD: PLIST,v 1.2 2012/12/02 10:38:51 cheusov Exp $
+@comment $NetBSD: PLIST,v 1.3 2016/09/13 09:41:29 fhajny Exp $
+bin/env_parallel
+bin/env_parallel.bash
+bin/env_parallel.csh
+bin/env_parallel.fish
+bin/env_parallel.ksh
+bin/env_parallel.pdksh
+bin/env_parallel.tcsh
+bin/env_parallel.zsh
 bin/niceload
 bin/parallel
 bin/sem
 bin/sql
+man/man1/env_parallel.1
 man/man1/niceload.1
 man/man1/parallel.1
 man/man1/sem.1
 man/man1/sql.1
+man/man7/parallel_design.7
+man/man7/parallel_tutorial.7
 share/doc/parallel/COPYING
 share/doc/parallel/NEWS
 share/doc/parallel/README
+share/doc/parallel/env_parallel.html
+share/doc/parallel/env_parallel.pdf
+share/doc/parallel/env_parallel.texi
 share/doc/parallel/niceload.html
+share/doc/parallel/niceload.pdf
 share/doc/parallel/niceload.texi
 share/doc/parallel/parallel.html
+share/doc/parallel/parallel.pdf
 share/doc/parallel/parallel.texi
+share/doc/parallel/parallel_design.html
+share/doc/parallel/parallel_design.pdf
+share/doc/parallel/parallel_design.texi
+share/doc/parallel/parallel_tutorial.html
+share/doc/parallel/parallel_tutorial.pdf
+share/doc/parallel/parallel_tutorial.texi
 share/doc/parallel/sem.html
+share/doc/parallel/sem.pdf
 share/doc/parallel/sem.texi
 share/doc/parallel/sql.html
+share/doc/parallel/sql.pdf
 share/doc/parallel/sql.texi

parallel/parallel/distinfo

@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.4 2013/06/16 21:46:35 wiz Exp $
+$NetBSD: distinfo,v 1.6 2016/09/13 09:41:29 fhajny Exp $
 
-SHA1 (parallel-20130122.tar.bz2) = 0f7eac7c8a574e173e322f359f4f3804c9d05203
-RMD160 (parallel-20130122.tar.bz2) = 642064b2b06083a39d9156a5ee2733ae614c2d5f
-Size (parallel-20130122.tar.bz2) = 238646 bytes
-SHA1 (patch-src_parallel.pod) = 7c0ce9636c308ccc736ac2bbc34c961f4857ad2f
+SHA1 (parallel-20160822.tar.bz2) = eacae06b0e145559d9f9d2f027be5cfac28f76bf
+RMD160 (parallel-20160822.tar.bz2) = 6f56b1bca8f6f29fd712f2657cff9c44796bcb90
+SHA512 (parallel-20160822.tar.bz2) = 303715075f50f0a0e18b1b9e65d860ae5ba9901efc6de096406ee69b8d91d4d3a648a966b388156024d0177f7d7b510b7df437c212ba587c4636d415278188ab
+Size (parallel-20160822.tar.bz2) = 1370647 bytes

parallel/parallel/patches/patch-src_parallel.pod

@@ -1,52 +0,0 @@
-$NetBSD: patch-src_parallel.pod,v 1.1 2013/06/16 21:46:35 wiz Exp $
-
-Fix build with perl-5.18, which does not like unescaped numbers after =item.
-
---- src/parallel.pod.orig	2013-01-21 22:43:00.000000000 +0000
-+++ src/parallel.pod
-@@ -522,18 +522,18 @@ Print a summary of the options to GNU B<
- 
- =over 3
- 
--=item 0
-+=item "0"
- 
- Do not halt if a job fails. Exit status will be the number of jobs
- failed. This is the default.
- 
--=item 1
-+=item "1"
- 
- Do not start new jobs if a job fails, but complete the running jobs
- including cleanup. The exit status will be the exit status from the
- last failing job.
- 
--=item 2
-+=item "2"
- 
- Kill off all jobs immediately and exit without cleanup. The exit
- status will be the exit status from the failing job.
-@@ -2724,19 +2724,19 @@ If B<--halt-on-error> 0 or not specified
- 
- =over 6
- 
--=item 0
-+=item "0"
- 
- All jobs ran without error.
- 
--=item 1-253
-+=item "1-253"
- 
- Some of the jobs failed. The exit status gives the number of failed jobs
- 
--=item 254
-+=item "254"
- 
- More than 253 jobs failed.
- 
--=item 255
-+=item "255"
- 
- Other error.
- 

parallel/pdsh/Makefile

@@ -1,17 +1,17 @@
-# $NetBSD: Makefile,v 1.3 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.5 2016/09/19 09:24:52 fhajny Exp $
 #
 
-DISTNAME=	pdsh-2.29
-PKGREVISION=	2
+DISTNAME=	pdsh-2.31
 CATEGORIES=	parallel
-MASTER_SITES=	http://pdsh.googlecode.com/files/
-EXTRACT_SUFX=	.tar.bz2
+MASTER_SITES=	${MASTER_SITE_GITHUB:=grondo/}
 
 MAINTAINER=	filip@joyent.com
-HOMEPAGE=	https://pdsh.googlecode.com/
+HOMEPAGE=	https://github.com/grondo/pdsh/
 COMMENT=	High-performance, parallel remote shell utility
 LICENSE=	gnu-gpl-v2
 
+GITHUB_TAG=	${DISTNAME}
+
 PKG_DESTDIR_SUPPORT=	user-destdir
 
 GNU_CONFIGURE=	yes

parallel/pdsh/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.1 2014/01/10 21:30:09 cheusov Exp $
+$NetBSD: distinfo,v 1.3 2016/09/19 09:24:52 fhajny Exp $
 
-SHA1 (pdsh-2.29.tar.bz2) = a3e44ffba151f023d72df67cd7a7d37b4a80c80e
-RMD160 (pdsh-2.29.tar.bz2) = c56e6cc85e3af4c3f5c025c45c723b04c683a797
-Size (pdsh-2.29.tar.bz2) = 470693 bytes
+SHA1 (pdsh-2.31.tar.gz) = ac219024a2bbe90656e25c534c463078665c6573
+RMD160 (pdsh-2.31.tar.gz) = 964912fd35b41397ee52ade73ef66cb896ae55fb
+SHA512 (pdsh-2.31.tar.gz) = 38b0aec1c1123ccb6e1bed0c76f88ea4bd3bc75711e09b72a41b1a247528ce702120b9bc35fa7c89f8fcea6e69dc25cb91d305f6f60810d1b9f6a044f3b4f282
+Size (pdsh-2.31.tar.gz) = 646112 bytes

parallel/pvm3/distinfo

@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.30 2011/11/27 00:28:29 marino Exp $
+$NetBSD: distinfo,v 1.31 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (pvm3.4.6.tgz) = dc22bb3a592bb37ab86f0de8d867f67949d12e91
 RMD160 (pvm3.4.6.tgz) = fa38e35d1d7a8e31b9c2baeb486a7371d6162378
+SHA512 (pvm3.4.6.tgz) = a8ddb8fc944bbe64d185eeffba0e020f28af4c8175a446511deca55d7c4f5cf62884c8c5dcb03dd9700bcc48368c8dab353e45656094d139385d88fdf34dd78a
 Size (pvm3.4.6.tgz) = 1014257 bytes
 SHA1 (patch-aa) = 01eb70804ffa50549ef2a9fd1d6d7417438053c6
 SHA1 (patch-ab) = bb34608cab2b1bf0c1a03c3626376ef3fb97627f

parallel/py-billiard/Makefile

@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.12 2014/07/16 23:15:12 rodent Exp $
+# $NetBSD: Makefile,v 1.13 2016/06/08 17:43:38 wiz Exp $
 
 DISTNAME=	billiard-3.3.0.18
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	parallel
-MASTER_SITES=	https://pypi.python.org/packages/source/b/billiard/
+MASTER_SITES=	${MASTER_SITE_PYPI:=b/billiard/}
 
 MAINTAINER=	rodent@NetBSD.org
 HOMEPAGE=	http://github.com/celery/billiard

parallel/py-billiard/distinfo

@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.7 2014/07/16 23:15:12 rodent Exp $
+$NetBSD: distinfo,v 1.8 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (billiard-3.3.0.18.tar.gz) = a3690bf6a789f4bd0aacffeb88ba90b24b80a764
 RMD160 (billiard-3.3.0.18.tar.gz) = c5e61e2ee51170d21951f98f5eb07f48ae637cb0
+SHA512 (billiard-3.3.0.18.tar.gz) = 8d62c1b5d3e979926cb416f6a85597cf2a959559e4f07f76f189e70cf585ef55ddbba9506bc50c2f9a88d8aa00684b7468668748edbd0530a72970334b8e2617
 Size (billiard-3.3.0.18.tar.gz) = 150594 bytes

parallel/sge/Makefile

@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.61 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.64 2016/07/09 06:38:48 wiz Exp $
 #
 
 DISTNAME=		sge-8.1.6
-PKGREVISION=		3
+PKGREVISION=		5
 CATEGORIES=		parallel sysutils
 MASTER_SITES=		http://arc.liv.ac.uk/downloads/SGE/releases/8.1.6/
 
@@ -32,8 +32,6 @@ PKG_GECOS.${SGE_USER}=	Sun Grid Engine Administrator
 PKG_GROUPS_VARS+=	SGE_GROUP
 PKG_USERS_VARS+=	SGE_USER
 
-EVAL_PREFIX+=	PKGSRC_SSL_PREFIX=openssl
-
 AIMK=	${SETENV} ${MAKE_ENV} ${CSH} -fb ${WRKSRC}/source/aimk
 
 CONFIG_GUESS_OVERRIDE=	source/3rdparty/qmake/config.guess \
@@ -116,12 +114,12 @@ post-patch:
 		${ECHO} "        `${WRKSRC}/source/dist/util/arch`" ; \
 		${FALSE} ; \
 	fi
-	( ${ECHO} "set OPENSSL_HOME = ${SSL_PREFIX}" ; \
+	( ${ECHO} "set OPENSSL_HOME = ${BUILDLINK_PREFIX.openssl}" ; \
 	${ECHO} "set BERKELEYDB_HOME = ${BUILDLINK_PREFIX.db4}" ; \
 	${ECHO} "set BDB_INCLUDE_SUBDIR = db4" ; \
 	${ECHO} "set BDB_LIB_SUFFIX = 4" ; \
 	${ECHO} "set PERL = ${PERL5}" ) > ${WRKSRC}/source/aimk.private
-	( ${ECHO} "OPENSSLBASE=${SSL_PREFIX}" ; \
+	( ${ECHO} "OPENSSLBASE=${BUILDLINK_PREFIX.openssl}" ; \
 	${ECHO} "BERKELEYDBBASE=${BUILDLINK_PREFIX.db4}" ) > ${WRKSRC}/source/distinst.private
 	rm ${WRKSRC}/source/dist/util/*.orig
 
@@ -168,7 +166,7 @@ do-install:
 	for f in archive checkpoint deadlock dump load printlog recover stat upgrade verify ; do \
 		ln -s ${LOCALBASE}/bin/db4_$${f} ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/db_$${f} ; done
 	ln -s ${LOCALBASE}/bin/berkeley_db4_svc ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/berkeley_db_svc
-	ln -s ${SSL_PREFIX}/bin/openssl ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/openssl
+	ln -s ${BUILDLINK_PREFIX.openssl}/bin/openssl ${DESTDIR}${SGE_ROOT}/utilbin/${SGE_ARCH}/openssl
 	cd ${DESTDIR}${SGE_ROOT} && ${SETENV} SGE_ROOT=${SGE_ROOT} DESTDIR=${DESTDIR} ./util/setfileperm.sh -auto \
 		${SGE_ROOT}
 	for f in ${DESTDIR}${SGE_ROOT}/bin/${SGE_ARCH}/q* ; do \
@@ -186,8 +184,3 @@ PLIST_SUBST+=	SGE_ARCH=${SGE_ARCH}
 .include "../../mk/motif.buildlink3.mk"
 .include "../../mk/pam.buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
-.if ${USE_BUILTIN.openssl} == "yes"
-SSL_PREFIX=	/usr
-.else
-SSL_PREFIX=	${PKGSRC_SSL_PREFIX}
-.endif

parallel/sge/distinfo

@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.19 2015/06/29 21:44:33 markd Exp $
+$NetBSD: distinfo,v 1.21 2016/06/01 13:36:27 joerg Exp $
 
 SHA1 (sge-8.1.6.tar.gz) = 8348a543c736ed4f1c36cf1e8242eeb1a61033df
 RMD160 (sge-8.1.6.tar.gz) = 231f4d100722c7a99a92e0b9b989125e5d15f295
+SHA512 (sge-8.1.6.tar.gz) = 5044acf4b3f37a785a383c6341b51fb026456ffd7e6f9c8bb7d115068f67e15a833fe2b504fa3652710fd54946ae36eabd872f0263f13d558ae4187b824a0aa6
 Size (sge-8.1.6.tar.gz) = 11875229 bytes
 SHA1 (patch-ad) = 8a1c2aa9245bee66068073df7a5434ca37de03c7
 SHA1 (patch-ag) = 57eb4296e531f3a47b95c8842e0db0575870dcf0
@@ -13,5 +14,6 @@ SHA1 (patch-daemons_common_procfs.c) = cdcbf58cb3278d5bc718fd235aaa76a10e938002
 SHA1 (patch-source-utilbin_Makefile) = 0a6fa06e71140ed8e74ebe0e5e37a4a3a515391b
 SHA1 (patch-source_3rdparty_sge_depend_def.h) = 92ad1ef5d0cf237fa083a262d38c67828593f679
 SHA1 (patch-source_libs_comm_cl_ssl_framework.c) = 230c2a510b52516d9eea934b8c797141167a0b6d
+SHA1 (patch-source_libs_spool_berkeleydb_Makefile) = 9418b67308c96cda40d2d70026cb31ef6c937693
 SHA1 (patch-source_libs_uti_sge__loadmem.c) = d781009ee8efbfa210a698c885f0aab51ae96818
 SHA1 (patch-source_util_arch) = c544eca206d2b260ed881f5112bedde68ac5029a

parallel/sge/patches/patch-source_libs_spool_berkeleydb_Makefile

@@ -0,0 +1,13 @@
+$NetBSD: patch-source_libs_spool_berkeleydb_Makefile,v 1.1 2016/06/01 13:36:27 joerg Exp $
+
+--- source/libs/spool/berkeleydb/Makefile.orig	2016-05-31 20:08:09.000000000 +0000
++++ source/libs/spool/berkeleydb/Makefile
+@@ -70,7 +70,7 @@ libspoolb.a:	$(SPOOLBLIB_OBJS) 
+    && ../scripts/nonreentrant.sh -a `../dist/util/arch` -w $@
+ 
+ libspoolb$(SHAREDEXT): $(SPOOLBLIB_OBJS) $(SPOOLLIB) $(SCHEDLIB) $(SGEOBJLIB) $(ALLLISTSLIB) $(COMMLIB) $(COMMLISTSLIB) $(CULLLIB) $(UTILIB) 
+-	$(SHAREDLD) $(SHARED_LFLAGS) -o libspoolb$(SHAREDEXT) $(SPOOLBLIB_OBJS) -lspool -lsched -lsgeobj -lsgeobjd -lcull -lcomm -lcommlists -luti $(SECLIB) -ldb${BDB_LIB_SUFFIX} $(LIBRARY_LIBS) \
++	$(SHAREDLD) $(SHARED_LFLAGS)  ${COMPILER_RPATH_FLAG}${PREFIX}/lib -L${PREFIX}/lib -o libspoolb$(SHAREDEXT) $(SPOOLBLIB_OBJS) -lspool -lsched -lsgeobj -lsgeobjd -lcull -lcomm -lcommlists -luti $(SECLIB) -ldb${BDB_LIB_SUFFIX} $(LIBRARY_LIBS) \
+    && ../scripts/nonreentrant.sh -a `../dist/util/arch` -w $@
+ 
+ ###############################################################################

parallel/slurm/Makefile

@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.17 2015/08/18 07:31:16 wiz Exp $
+# $NetBSD: Makefile,v 1.19 2016/07/09 06:38:48 wiz Exp $
 
 DISTNAME=	slurm-2.6.4
-PKGREVISION=	7
+PKGREVISION=	9
 CATEGORIES=	parallel
 MASTER_SITES=	http://www.schedmd.com/download/archive/ \
 		http://www.schedmd.com/download/latest/ \

parallel/slurm/distinfo

@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.4 2014/03/19 22:05:39 asau Exp $
+$NetBSD: distinfo,v 1.5 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (slurm-2.6.4.tar.bz2) = 6a5850b53201d506a86ab23d13318be34395d237
 RMD160 (slurm-2.6.4.tar.bz2) = a6b4ab6782b0db0822acb2fd7efe6c1464b8a87c
+SHA512 (slurm-2.6.4.tar.bz2) = 7aecf83350fddd1b6f6c901a133c30d7b27c3c548715583e6e9c4325c7d2deee883ff0f3806f67f098b4b85fdd86e5ccbf56959bb9377349582219ccbaa21e29
 Size (slurm-2.6.4.tar.bz2) = 5954130 bytes
 SHA1 (patch-doc_html_Makefile.am) = 9152b1c6d735fbd106a5b2841b09b0c0d5fdbf9e
 SHA1 (patch-doc_html_Makefile.in) = 237da04742791877d42d4b68805b2a513aab8f40

parallel/threadingbuildingblocks/distinfo

@@ -1,6 +1,7 @@
-$NetBSD: distinfo,v 1.2 2013/10/20 17:58:05 joerg Exp $
+$NetBSD: distinfo,v 1.3 2015/11/02 23:46:13 agc Exp $
 
 SHA1 (tbb30_20110325oss_src.tgz) = b58650cdaa8e8497de2a797af1d03dcfc1c63351
 RMD160 (tbb30_20110325oss_src.tgz) = c95aa788d518d806b516b9e9e179d93bce19aa9c
+SHA512 (tbb30_20110325oss_src.tgz) = 56498482bdcbe87f0a4d59234de0ba888b1e0770aff28dbe6e5b6c169e8c0b1987480db6cf4d1aab5c3da97ca5da626469237643df44762ba76121d4d93629b9
 Size (tbb30_20110325oss_src.tgz) = 1880565 bytes
 SHA1 (patch-build_FreeBSD.gcc.inc) = f3f0e418b1eda91646e9e9cc9c34d40865eb7514