Import of pkgsrc-2013Q2

math/Makefile

@@ -0,0 +1,256 @@
+# $NetBSD: Makefile,v 1.252 2013/06/10 12:31:25 ryoon Exp $
+
+COMMENT=	Mathematics
+
+SUBDIR+=	R
+SUBDIR+=	R-CGIwithR
+SUBDIR+=	R-DAAG
+SUBDIR+=	R-DBI
+SUBDIR+=	R-GRASS
+SUBDIR+=	R-ISwR
+SUBDIR+=	R-PHYLOGR
+SUBDIR+=	R-R2HTML
+SUBDIR+=	R-RArcInfo
+SUBDIR+=	R-RColorBrewer
+SUBDIR+=	R-RPostgreSQL
+SUBDIR+=	R-RandomFields
+SUBDIR+=	R-Rcmdr
+SUBDIR+=	R-XML
+SUBDIR+=	R-abind
+SUBDIR+=	R-akima
+SUBDIR+=	R-bitops
+SUBDIR+=	R-car
+SUBDIR+=	R-chron
+SUBDIR+=	R-circular
+SUBDIR+=	R-classInt
+SUBDIR+=	R-clim.pact
+SUBDIR+=	R-combinat
+SUBDIR+=	R-date
+SUBDIR+=	R-e1071
+SUBDIR+=	R-gdata
+SUBDIR+=	R-genetics
+SUBDIR+=	R-geoR
+SUBDIR+=	R-geoRglm
+SUBDIR+=	R-gstat
+SUBDIR+=	R-gtools
+SUBDIR+=	R-httpRequest
+SUBDIR+=	R-hwde
+SUBDIR+=	R-intervals
+SUBDIR+=	R-lmm
+SUBDIR+=	R-mapproj
+SUBDIR+=	R-maps
+SUBDIR+=	R-mvtnorm
+SUBDIR+=	R-ncdf
+SUBDIR+=	R-pixmap
+SUBDIR+=	R-randomForest
+SUBDIR+=	R-sgeostat
+SUBDIR+=	R-shapefiles
+SUBDIR+=	R-sp
+SUBDIR+=	R-spacetime
+SUBDIR+=	R-splancs
+SUBDIR+=	R-statmod
+SUBDIR+=	R-wle
+SUBDIR+=	R-xts
+SUBDIR+=	R-zoo
+SUBDIR+=	TinySVM
+SUBDIR+=	aamath
+SUBDIR+=	abs
+SUBDIR+=	admesh
+SUBDIR+=	algae
+SUBDIR+=	analitza
+SUBDIR+=	antixls
+SUBDIR+=	aribas
+SUBDIR+=	arpack
+SUBDIR+=	bc
+SUBDIR+=	blas
+SUBDIR+=	blitz++
+SUBDIR+=	calc
+SUBDIR+=	calcoo
+SUBDIR+=	cantor
+SUBDIR+=	capc-calc
+SUBDIR+=	cgal
+SUBDIR+=	clisp-pari
+SUBDIR+=	cln
+SUBDIR+=	cloog
+SUBDIR+=	dcdflib.c
+SUBDIR+=	dcdflib.f
+SUBDIR+=	dfftpack
+SUBDIR+=	dieharder
+SUBDIR+=	djbfft
+SUBDIR+=	eigen2
+SUBDIR+=	eigen3
+SUBDIR+=	eispack
+SUBDIR+=	ess
+SUBDIR+=	eukleides
+SUBDIR+=	eukleides10
+SUBDIR+=	euler
+SUBDIR+=	extcalc
+SUBDIR+=	fftpack
+SUBDIR+=	fftw
+SUBDIR+=	fftw2
+SUBDIR+=	fftwf
+SUBDIR+=	fgmp
+SUBDIR+=	fityk
+SUBDIR+=	fricas
+SUBDIR+=	galculator
+SUBDIR+=	gap
+SUBDIR+=	gcalctool
+SUBDIR+=	gcalctool-gtk3
+SUBDIR+=	geg
+SUBDIR+=	genius
+SUBDIR+=	glpk
+SUBDIR+=	gnumeric
+SUBDIR+=	gnumeric110
+SUBDIR+=	gnumeric112
+SUBDIR+=	gp-autpgrp
+SUBDIR+=	gp-factint
+SUBDIR+=	gp-fplsa
+SUBDIR+=	gp-grape
+SUBDIR+=	gp-grpconst
+SUBDIR+=	gp-lag
+SUBDIR+=	grace
+SUBDIR+=	graphopt
+SUBDIR+=	grpn
+SUBDIR+=	gsl
+SUBDIR+=	gtklife
+SUBDIR+=	harminv
+SUBDIR+=	heirloom-factor
+SUBDIR+=	heirloom-units
+SUBDIR+=	isl
+SUBDIR+=	itpp
+SUBDIR+=	kalgebra
+SUBDIR+=	kcalc
+SUBDIR+=	kseg
+SUBDIR+=	lapack
+SUBDIR+=	libffm
+SUBDIR+=	libint
+SUBDIR+=	libmatheval
+SUBDIR+=	linpack
+SUBDIR+=	lp_solve
+SUBDIR+=	ltm
+SUBDIR+=	mapm
+SUBDIR+=	mathomatic
+SUBDIR+=	maxima
+SUBDIR+=	mcsim
+SUBDIR+=	meschach
+SUBDIR+=	metis
+SUBDIR+=	minpack
+SUBDIR+=	mpcomplex
+SUBDIR+=	mpfr
+SUBDIR+=	mprime-bin
+SUBDIR+=	mtl
+SUBDIR+=	muparser
+SUBDIR+=	newmat
+SUBDIR+=	nickle
+SUBDIR+=	ntl
+SUBDIR+=	octave
+SUBDIR+=	octave-forge
+SUBDIR+=	odepack
+SUBDIR+=	openaxiom
+SUBDIR+=	openfst
+SUBDIR+=	ordCalc
+SUBDIR+=	otter
+SUBDIR+=	p5-Excel-Template
+SUBDIR+=	p5-Excel-Template-Plus
+SUBDIR+=	p5-Math-Base36
+SUBDIR+=	p5-Math-Base85
+SUBDIR+=	p5-Math-BaseCnv
+SUBDIR+=	p5-Math-Bezier
+SUBDIR+=	p5-Math-BigInt-GMP
+SUBDIR+=	p5-Math-BigInt-Pari
+SUBDIR+=	p5-Math-BigInteger
+SUBDIR+=	p5-Math-FFT
+SUBDIR+=	p5-Math-GMP
+SUBDIR+=	p5-Math-Interpolate
+SUBDIR+=	p5-Math-MatrixReal
+SUBDIR+=	p5-Math-Pari
+SUBDIR+=	p5-Math-Permute-List
+SUBDIR+=	p5-Math-Prime-Util
+SUBDIR+=	p5-Math-Random
+SUBDIR+=	p5-Math-Random-MT
+SUBDIR+=	p5-Math-Random-MT-Auto
+SUBDIR+=	p5-Math-Random-MT-Perl
+SUBDIR+=	p5-Math-Round
+SUBDIR+=	p5-Math-VecStat
+SUBDIR+=	p5-Number-Compare
+SUBDIR+=	p5-Number-Latin
+SUBDIR+=	p5-Roman
+SUBDIR+=	p5-Set-Crontab
+SUBDIR+=	p5-Set-Infinite
+SUBDIR+=	p5-Spreadsheet-ParseExcel
+SUBDIR+=	p5-Spreadsheet-Read
+SUBDIR+=	p5-Spreadsheet-ReadSXC
+SUBDIR+=	p5-Spreadsheet-WriteExcel
+SUBDIR+=	p5-Spreadsheet-XLSX
+SUBDIR+=	p5-Statistics-Descriptive
+SUBDIR+=	p5-Test-Number-Delta
+SUBDIR+=	pari
+SUBDIR+=	pari-galdata
+SUBDIR+=	pear-Math_BigInteger
+SUBDIR+=	pear-Numbers_Roman
+SUBDIR+=	pear-Numbers_Words
+SUBDIR+=	php-bcmath
+SUBDIR+=	ppl
+SUBDIR+=	prng
+SUBDIR+=	pspp
+SUBDIR+=	py-Numeric
+SUBDIR+=	py-Scientific
+SUBDIR+=	py-Scientific-doc
+SUBDIR+=	py-ephem
+SUBDIR+=	py-fpconst
+SUBDIR+=	py-gmpy
+SUBDIR+=	py-mpmath
+SUBDIR+=	py-munkres
+SUBDIR+=	py-networkx
+SUBDIR+=	py-numarray
+SUBDIR+=	py-numexpr
+SUBDIR+=	py-numpy
+SUBDIR+=	py-pandas
+SUBDIR+=	py-pytables
+SUBDIR+=	py-roman
+SUBDIR+=	py-rpy
+SUBDIR+=	py-scipy
+SUBDIR+=	py-sympy
+SUBDIR+=	qalculate
+SUBDIR+=	qalculate-bases
+SUBDIR+=	qalculate-currency
+SUBDIR+=	qalculate-gtk
+SUBDIR+=	qalculate-kde
+SUBDIR+=	qalculate-units
+SUBDIR+=	qhull
+SUBDIR+=	quadpack
+SUBDIR+=	randlib
+SUBDIR+=	ruby-gsl
+SUBDIR+=	ruby-narray
+SUBDIR+=	ruby-spreadsheet
+SUBDIR+=	sc
+SUBDIR+=	scilab
+SUBDIR+=	slatec
+SUBDIR+=	snns
+SUBDIR+=	speedcrunch
+SUBDIR+=	statist
+SUBDIR+=	superlu
+SUBDIR+=	tasp-vsipl
+SUBDIR+=	teapot
+SUBDIR+=	tex-fp
+SUBDIR+=	tex-fp-doc
+SUBDIR+=	tex-kastrup
+SUBDIR+=	tex-kastrup-doc
+SUBDIR+=	texdrive
+SUBDIR+=	tochnog
+SUBDIR+=	udunits
+SUBDIR+=	units
+SUBDIR+=	vista
+SUBDIR+=	wxMaxima
+SUBDIR+=	xeukleides10
+SUBDIR+=	xfractint
+SUBDIR+=	xgap
+SUBDIR+=	xldlas
+SUBDIR+=	xlife
+SUBDIR+=	xlispstat
+SUBDIR+=	xmgr
+SUBDIR+=	xylib
+SUBDIR+=	yacas
+SUBDIR+=	yorick
+
+.include "../mk/misc/category.mk"

math/R-CGIwithR/DESCR

@@ -0,0 +1 @@
+Facilities for the use of R to write CGI scripts.

math/R-CGIwithR/MESSAGE

@@ -0,0 +1,4 @@
+After the installation of this R package is complete
+copy the files R.cgi and .Rprofile in
+    ${PREFIX}/lib/R/library/CGIwithR/cgi-bin/
+to the cgi-bin area of your Web server.

math/R-CGIwithR/Makefile

@@ -0,0 +1,28 @@
+# $NetBSD: Makefile,v 1.13 2013/06/04 22:16:37 tron Exp $
+#
+
+PKGREVISION=		8
+CATEGORIES=		math
+MASTER_SITES=		${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=		mchittur@cs.nmsu.edu
+HOMEPAGE=		${R_HOMEPAGE_BASE}/CGIwithR/
+COMMENT=		Facilities for the use of R to write CGI scripts
+
+R_PKGNAME=		CGIwithR
+R_PKGVER=		0.73-0
+
+REPLACE_INTERPRETER+=	r
+REPLACE.r.old=		.*R
+REPLACE.r.new=		${PREFIX}/bin/R
+REPLACE_FILES.r=	inst/examples/dangerous.R inst/examples/trivial.R
+
+SUBST_CLASSES+=			fix-paths
+SUBST_STAGE.fix-paths=		post-patch
+SUBST_MESSAGE.fix-paths=	Fixing absolute paths.
+SUBST_FILES.fix-paths=		inst/cgi-bin/R.cgi
+SUBST_SED.fix-paths=		-e 's,/usr/local,${PREFIX},g'
+
+.include "../../math/R/Makefile.extension"
+.include "../../print/ghostscript/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"

math/R-CGIwithR/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2011/05/10 18:55:55 alnsn Exp $
+
+SHA1 (R/CGIwithR_0.73-0.tar.gz) = 70def800a7894a300b59c96df0169849fdcc07c6
+RMD160 (R/CGIwithR_0.73-0.tar.gz) = dbd075191e2bb31e81e609baccc4f9e557db1a0f
+Size (R/CGIwithR_0.73-0.tar.gz) = 191630 bytes

math/R-DAAG/DESCR

@@ -0,0 +1,3 @@
+Various data sets used in examples and exercises in the book
+Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data Analysis and
+Graphics Using R".

math/R-DAAG/Makefile

@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.9 2012/04/15 13:33:06 brook Exp $
+
+CATEGORIES=	databases math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/DAAG/
+COMMENT=	Example data sets and functions implemented in R
+# LICENSE=	Unlimited
+
+R_PKGNAME=	DAAG
+R_PKGVER=	1.12
+
+DEPENDS+=	R-randomForest>=4.6.6:../../math/R-randomForest
+
+INSTALLATION_DIRS+=	lib/R/doc/html/search
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-DAAG/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2012/04/15 13:33:06 brook Exp $
+
+SHA1 (R/DAAG_1.12.tar.gz) = 6621bb76a65e51b59779d876c163ea77b4034309
+RMD160 (R/DAAG_1.12.tar.gz) = 024e9e0a34305cfa36a26432483a0943849374b4
+Size (R/DAAG_1.12.tar.gz) = 973803 bytes

math/R-DBI/DESCR

@@ -0,0 +1,4 @@
+A database interface (DBI) definition for communication between R and
+relational database management systems.  All classes in this package
+are virtual and need to be extended by the various R/DBMS
+implementations.

math/R-DBI/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.1.1.1 2012/04/15 17:54:23 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/DBI/
+COMMENT=	R Database Interface
+LICENSE=	gnu-lgpl-v2
+
+R_PKGNAME=	DBI
+R_PKGVER=	0.2-5
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-DBI/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1.1.1 2012/04/15 17:54:23 brook Exp $
+
+SHA1 (R/DBI_0.2-5.tar.gz) = 73100ae199fd4c058e3ccf7edbe8bdd39da7df18
+RMD160 (R/DBI_0.2-5.tar.gz) = e21168293166a2b8066e27a7ff4806c676a0f0a3
+Size (R/DBI_0.2-5.tar.gz) = 308395 bytes

math/R-GRASS/DESCR

@@ -0,0 +1,7 @@
+Interface between GRASS 5.0 geographical information system
+and R, based on starting R from within the GRASS environment
+using values of environment variables set in the GISRC file.
+Interface examples should be run outside GRASS, others may
+be run within. Wrapper and helper functions are provided for
+a range of R functions to match the interface metadata
+structures.

math/R-GRASS/Makefile

@@ -0,0 +1,14 @@
+# $NetBSD: Makefile,v 1.6 2009/12/11 19:14:36 adam Exp $
+
+CATEGORIES=	databases math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	mchittur@cs.nmsu.edu
+HOMEPAGE=	${R_HOMEPAGE_BASE}/GRASS/
+COMMENT=	Interface between GRASS 5.0 geographical information system and R
+
+R_PKGNAME=	GRASS
+R_PKGVER=	0.3-8
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-GRASS/distinfo

@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.5 2009/12/11 19:14:36 adam Exp $
+
+SHA1 (R/GRASS_0.3-8.tar.gz) = ceed1ef2ee3ad94c04f98326955256ee536619e6
+RMD160 (R/GRASS_0.3-8.tar.gz) = ad4d5a8002ee0a6ee16241eeb47357ca3d59de85
+Size (R/GRASS_0.3-8.tar.gz) = 230510 bytes
+SHA1 (patch-aa) = 6275c08691efd46a82484d0f79fc4c90fb1466b4
+SHA1 (patch-ab) = 353cd59744ae56fdf6cafaaea951cd4d8f487d98

math/R-GRASS/patches/patch-aa

@@ -0,0 +1,15 @@
+$NetBSD: patch-aa,v 1.1 2006/12/29 14:18:21 joerg Exp $
+
+--- configure.orig	2006-12-29 14:05:37.000000000 +0000
++++ configure
+@@ -2900,8 +2900,8 @@ fi
+ 
+ done
+ 
+-if test "${ac_cv_header_rpc/xdr_h}" = no ||
+-    test "${ac_cv_header_rpc/types_h}" = no; then
++if test "${ac_cv_header_rpc_xdr_h}" = no ||
++    test "${ac_cv_header_rpc_types_h}" = no; then
+     { { echo "$as_me:$LINENO: error: \"xdr headers rpc/xdr.h and rpc/types.h not found\"" >&5
+ echo "$as_me: error: \"xdr headers rpc/xdr.h and rpc/types.h not found\"" >&2;}
+    { (exit 1); exit 1; }; }

math/R-GRASS/patches/patch-ab

@@ -0,0 +1,15 @@
+$NetBSD: patch-ab,v 1.1 2006/12/29 14:18:21 joerg Exp $
+
+--- configure.ac.orig	2006-12-29 14:09:39.000000000 +0000
++++ configure.ac
+@@ -23,8 +23,8 @@ else
+ fi
+ 
+ AC_CHECK_HEADERS(rpc/xdr.h rpc/types.h)
+-if test "${ac_cv_header_rpc/xdr_h}" = no ||
+-    test "${ac_cv_header_rpc/types_h}" = no; then
++if test "${ac_cv_header_rpc_xdr_h}" = no ||
++    test "${ac_cv_header_rpc_types_h}" = no; then
+     AC_MSG_ERROR("xdr headers rpc/xdr.h and rpc/types.h not found")
+ fi
+ AC_SEARCH_LIBS(xdrmem_create, [nsl])

math/R-ISwR/DESCR

@@ -0,0 +1,3 @@
+Data sets and scripts for text examples and exercises in P. Dalgaard
+(2008), `Introductory Statistics with R', 2nd ed., Springer Verlag,
+ISBN 978-0387790534.

math/R-ISwR/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.7 2012/04/15 14:45:35 brook Exp $
+
+CATEGORIES=	databases math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/ISwR/
+COMMENT=	Data sets and scripts for 'Introductory Statistics with R'
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	ISwR
+R_PKGVER=	2.0-6
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-ISwR/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2012/04/15 14:45:35 brook Exp $
+
+SHA1 (R/ISwR_2.0-6.tar.gz) = e436387186a80421980136038b72dfa0b7a17150
+RMD160 (R/ISwR_2.0-6.tar.gz) = 67d91a7675c27bf86b299ee428412c1fc1f69cec
+Size (R/ISwR_2.0-6.tar.gz) = 162710 bytes

math/R-PHYLOGR/DESCR

@@ -0,0 +1,2 @@
+Manipulation and analysis of phylogenetically simulated data sets and
+phylogenetically based analyses using GLS.

math/R-PHYLOGR/Makefile

@@ -0,0 +1,16 @@
+# $NetBSD: Makefile,v 1.5 2012/04/15 14:48:26 brook Exp $
+#
+
+CATEGORIES=		databases math
+MASTER_SITES=		${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=		pkgsrc-users@NetBSD.org
+HOMEPAGE=		${R_HOMEPAGE_BASE}/PHYLOGR/
+COMMENT=		Manipulation of phylogenetically simulated data sets using GLS
+LICENSE=		gnu-gpl-v2
+
+R_PKGNAME=		PHYLOGR
+R_PKGVER=		1.0.7
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-PHYLOGR/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2012/04/15 14:48:26 brook Exp $
+
+SHA1 (R/PHYLOGR_1.0.7.tar.gz) = bb7c280fef9c48a8ded1612c915323e6e77f831b
+RMD160 (R/PHYLOGR_1.0.7.tar.gz) = a342763177baef67e90e555bcdf3d2ed2efbfd68
+Size (R/PHYLOGR_1.0.7.tar.gz) = 751227 bytes

math/R-R2HTML/DESCR

@@ -0,0 +1,9 @@
+Includes HTML function and methods to write an HTML file.  Thus,
+making HTML reports is easy.  Includes a function that allows
+redirection on the fly, which appears to be very usefull for teaching
+purposes, as the student can keep a copy of the produced output to
+keep all that he did during the course.  Package comes with a vignette
+describing how to write HTML reports for statistical analysis.
+Finally, a driver for Sweave allows to parse HTML flat files
+containing R code and to automatically write the corresponding outputs
+(tables and graphs).

math/R-R2HTML/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.6 2012/04/15 14:51:05 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/R2HTML/
+COMMENT=	R functions to write an HTML file
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	R2HTML
+R_PKGVER=	2.2
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-R2HTML/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.4 2012/04/15 14:51:05 brook Exp $
+
+SHA1 (R/R2HTML_2.2.tar.gz) = afd181886b3ba5c01a8ebdbed010a7477dca4b91
+RMD160 (R/R2HTML_2.2.tar.gz) = d088b22bcaea90835360926d5ad8172cdbe4f24c
+Size (R/R2HTML_2.2.tar.gz) = 315405 bytes

math/R-RArcInfo/DESCR

@@ -0,0 +1,13 @@
+RArcInfo is a package for the R statistical program to import Arc/Info
+V7.x binary coverages. It is based on the library Avcelib written by
+Daniel Morissette.
+
+Currently, RArcInfo supports most of the file formats stored by these
+type of coverages. The geographical information (arcs, polygons,
+topological relationships, etc.) are stored using lists, but all the
+tables containing related information are imported into a data frame.
+
+Once the desired data are imported, the user can draw maps, even
+filling the polygons according to the value of a given
+covariate. Although R is not designed for heavy G.I.S. work, this
+package is very helpful to work with binary coverages inside R.

math/R-RArcInfo/Makefile

@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.5 2012/04/15 16:57:19 brook Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/RArcInfo/
+COMMENT=	Read geographical information from Arc/Info
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	RArcInfo
+R_PKGVER=	0.4-12
+
+DEPENDS+=	R-RColorBrewer>=1.0.5:../../math/R-RColorBrewer
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-RArcInfo/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2012/04/15 16:57:19 brook Exp $
+
+SHA1 (R/RArcInfo_0.4-12.tar.gz) = 26eea6768946ebb1cb722a3e41771c0d3e675ec5
+RMD160 (R/RArcInfo_0.4-12.tar.gz) = 2dfc012db4dd9c1ceb23c356054c924ce0334d5b
+Size (R/RArcInfo_0.4-12.tar.gz) = 463131 bytes

math/R-RColorBrewer/DESCR

@@ -0,0 +1,2 @@
+The packages provides palettes for drawing nice maps shaded according
+to a variable.

math/R-RColorBrewer/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.1.1.1 2012/04/15 16:43:47 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/RColorBrewer/
+COMMENT=	ColorBrewer palettes
+LICENSE=	apache-2.0
+
+R_PKGNAME=	RColorBrewer
+R_PKGVER=	1.0-5
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-RColorBrewer/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1.1.1 2012/04/15 16:43:47 brook Exp $
+
+SHA1 (R/RColorBrewer_1.0-5.tar.gz) = 83ad459a240ab23d4c3f006f470435821d7cfb15
+RMD160 (R/RColorBrewer_1.0-5.tar.gz) = c43157597c3224290a8e805a3802fd8417a5f2f4
+Size (R/RColorBrewer_1.0-5.tar.gz) = 10656 bytes

math/R-RPostgreSQL/DESCR

@@ -0,0 +1,4 @@
+Database interface and PostgreSQL driver for R.  This package provides
+a Database Interface (DBI) compliant driver for R to access PostgreSQL
+database systems.  A wiki and issue tracking system for the package
+are available at Google Code at https://code.google.com/p/rpostgresql/.

math/R-RPostgreSQL/Makefile

@@ -0,0 +1,24 @@
+# $NetBSD: Makefile,v 1.2 2012/08/05 10:02:12 obache Exp $
+
+PKGREVISION=	1
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/RPostgreSQL/
+COMMENT=	R interface to the PostgreSQL database system
+LICENSE=	gnu-gpl-v2 AND postgresql-license
+
+R_PKGNAME=	RPostgreSQL
+R_PKGVER=	0.3-2
+
+DEPENDS+=	R-DBI>=0.2.5:../../math/R-DBI
+
+USE_TOOLS+=	sh
+REPLACE_SH+=	${WRKSRC}/inst/devTests/copyTest.sh
+
+CHECK_INTERPRETER_SKIP=	lib/R/library/RPostgreSQL/devTests/*
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/pgsql.buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"

math/R-RPostgreSQL/distinfo

@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.2 2012/04/16 00:43:40 brook Exp $
+
+SHA1 (R/RPostgreSQL_0.3-2.tar.gz) = cffa6237894727008d7079e24ab3a561ae139816
+RMD160 (R/RPostgreSQL_0.3-2.tar.gz) = 4c53b8183716455100883545465d3437e2ef17f9
+Size (R/RPostgreSQL_0.3-2.tar.gz) = 470695 bytes
+SHA1 (patch-configure) = 6c73a381bc4ebf96466645902395b552e6abc21d
+SHA1 (patch-configure.in) = b9d242940d8ed1f24ec0456dc0f346c3fce2f33c

math/R-RPostgreSQL/patches/patch-configure

@@ -0,0 +1,15 @@
+$NetBSD: patch-configure,v 1.1.1.1 2012/04/15 17:57:36 brook Exp $
+
+# see http://code.google.com/p/rpostgresql/issues/detail?id=39
+
+--- configure.orig	2011-12-31 13:11:52.000000000 +0000
++++ configure
+@@ -3008,7 +3008,7 @@ as_val=`eval 'as_val=${'$as_ac_File'}
+ 
+ 
+ ENABLE_LIBPQ=
+-if test $R_OS_TYPE == "darwin" ; then
++if test $R_OS_TYPE = "darwin" ; then
+ ENABLE_LIBPQ='
+ 
+ PKG_CPPFLAGS=-Ilibpq

math/R-RPostgreSQL/patches/patch-configure.in

@@ -0,0 +1,15 @@
+$NetBSD: patch-configure.in,v 1.1.1.1 2012/04/15 17:57:36 brook Exp $
+
+# see http://code.google.com/p/rpostgresql/issues/detail?id=39
+
+--- configure.in.orig	2011-12-31 13:11:52.000000000 +0000
++++ configure.in
+@@ -115,7 +115,7 @@ AC_SUBST(PKG_CPPFLAGS)
+ AC_SUBST(PKG_LIBS)
+ 
+ ENABLE_LIBPQ=
+-if test $R_OS_TYPE == "darwin" ; then
++if test $R_OS_TYPE = "darwin" ; then
+ ENABLE_LIBPQ='
+ 
+ PKG_CPPFLAGS=-Ilibpq

math/R-RandomFields/DESCR

@@ -0,0 +1,2 @@
+Simulation of Gaussian and extreme value random fields; conditional
+simulation; kriging.

math/R-RandomFields/Makefile

@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.1.1.1 2012/04/01 17:46:27 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/RandomFields/
+COMMENT=	Simulation and analysis of random fields
+# LICENSE=	GPL (gnu-gpl-v?)
+
+R_PKGNAME=	RandomFields
+R_PKGVER=	2.0.54
+
+USE_LANGUAGES+=	c c++ fortran
+
+.include "../../math/R/Makefile.extension"
+.include "../../math/blas/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"

math/R-RandomFields/distinfo

@@ -0,0 +1,8 @@
+$NetBSD: distinfo,v 1.2 2013/06/13 14:27:21 joerg Exp $
+
+SHA1 (R/RandomFields_2.0.54.tar.gz) = 58ba27eaf42977552ae49fb2044871b32340c691
+RMD160 (R/RandomFields_2.0.54.tar.gz) = 216538e7ec971624b258dfc4d37f5be999c45160
+Size (R/RandomFields_2.0.54.tar.gz) = 493065 bytes
+SHA1 (patch-src_MLE.cc) = 859ea7c42d6b680f7f03d81292f34df75249558f
+SHA1 (patch-src_getNset.cc) = 49d769a7254de108442a97d0966acb4110c9306f
+SHA1 (patch-src_userinterfaces.cc) = 195b7e9c27b297c7e13124c873b159bf19969eae

math/R-RandomFields/patches/patch-src_MLE.cc

@@ -0,0 +1,15 @@
+$NetBSD: patch-src_MLE.cc,v 1.1 2013/06/13 14:27:21 joerg Exp $
+
+--- src/MLE.cc.orig	2013-06-12 19:41:35.000000000 +0000
++++ src/MLE.cc
+@@ -22,10 +22,8 @@ along with this program; if not, write t
+ Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ */
+ 
+-extern "C" {
+ #include <R.h>
+ #include <Rdefines.h>
+-}
+ #include <R_ext/Linpack.h>
+ #include <math.h>  
+ #include <stdio.h>  

math/R-RandomFields/patches/patch-src_getNset.cc

@@ -0,0 +1,15 @@
+$NetBSD: patch-src_getNset.cc,v 1.1 2013/06/13 14:27:21 joerg Exp $
+
+--- src/getNset.cc.orig	2013-06-12 19:43:18.000000000 +0000
++++ src/getNset.cc
+@@ -23,10 +23,8 @@ along with this program; if not, write t
+ Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ */
+ 
+-extern "C" {
+ #include <R.h>
+ #include <Rdefines.h>
+-}
+ #include <math.h>  
+ #include <stdio.h>  
+ #include <stdlib.h>

math/R-RandomFields/patches/patch-src_userinterfaces.cc

@@ -0,0 +1,15 @@
+$NetBSD: patch-src_userinterfaces.cc,v 1.1 2013/06/13 14:27:21 joerg Exp $
+
+--- src/userinterfaces.cc.orig	2013-06-12 19:43:36.000000000 +0000
++++ src/userinterfaces.cc
+@@ -23,10 +23,8 @@ along with this program; if not, write t
+ Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ */
+ 
+-extern "C" {
+ #include <R.h>
+ #include <Rdefines.h>
+-}
+ #include <R_ext/Linpack.h>
+ #include <math.h>  
+ #include <stdio.h>  

math/R-Rcmdr/DESCR

@@ -0,0 +1,2 @@
+A platform-independent basic-statistics GUI (graphical user interface)
+for R, based on the tcltk package.

math/R-Rcmdr/Makefile

@@ -0,0 +1,17 @@
+# $NetBSD: Makefile,v 1.7 2012/04/15 15:49:00 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/Rcmdr/
+COMMENT=	Platform-independent basic-statistics GUI for R
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	Rcmdr
+R_PKGVER=	1.8-4
+
+DEPENDS+=	R-car>=2.0.12:../../math/R-car
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-Rcmdr/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.4 2012/04/15 15:49:00 brook Exp $
+
+SHA1 (R/Rcmdr_1.8-4.tar.gz) = 2a05118e3acfe8d9ce33762f630b7a55253409ca
+RMD160 (R/Rcmdr_1.8-4.tar.gz) = 4fed94e6c871e4551ff34ec3782cf5a9148ac493
+Size (R/Rcmdr_1.8-4.tar.gz) = 2610124 bytes

math/R-XML/DESCR

@@ -0,0 +1,3 @@
+This package provides many approaches for both reading and creating
+XML (and HTML) documents (including DTDs), both local and accessible
+via HTTP or FTP. It also offers access to an XPath "interpreter".

math/R-XML/Makefile

@@ -0,0 +1,17 @@
+# $NetBSD: Makefile,v 1.3 2012/06/14 07:45:23 sbd Exp $
+
+PKGREVISION=	1
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	alnsn@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/XML/
+COMMENT=	Tools for parsing and generating XML within R
+LICENSE=	2-clause-bsd
+
+R_PKGNAME=	XML
+R_PKGVER=	3.9-4
+
+.include "../../math/R/Makefile.extension"
+.include "../../textproc/libxml2/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"

math/R-XML/buildlink3.mk

@@ -0,0 +1,13 @@
+# $NetBSD: buildlink3.mk,v 1.1 2011/06/14 21:30:08 alnsn Exp $
+
+BUILDLINK_TREE+=	RXML
+
+.if !defined(RXML_BUILDLINK3_MK)
+RXML_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.RXML+=	R-XML>=3.4.0
+BUILDLINK_ABI_DEPENDS.RXML+=	R-XML>=3.4.0
+BUILDLINK_PKGSRCDIR.RXML?=	../../math/R-XML
+.endif # RXML_BUILDLINK3_MK
+
+BUILDLINK_TREE+=	-RXML

math/R-XML/distinfo

@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.3 2013/06/13 14:27:50 joerg Exp $
+
+SHA1 (R/XML_3.9-4.tar.gz) = 36fbbd8df0abd6c7fdeb5f606e89f6171a2c4399
+RMD160 (R/XML_3.9-4.tar.gz) = 7f5ad42eea9f790e34ffe72cc12b7b5020882148
+Size (R/XML_3.9-4.tar.gz) = 923501 bytes
+SHA1 (patch-configure) = 594acfce620f3f3852c529924f9903088d0c6ba8
+SHA1 (patch-configure.in) = cf1d85bc75c194071e95c5c6a7530b8869d18e61

math/R-XML/patches/patch-configure

@@ -0,0 +1,13 @@
+$NetBSD: patch-configure,v 1.1 2013/06/13 14:27:50 joerg Exp $
+
+--- configure.orig	2013-06-13 11:00:58.000000000 +0000
++++ configure
+@@ -4541,7 +4541,7 @@ cat >>conftest.$ac_ext <<_ACEOF
+ #include <libxml/parser.h>
+ #endif
+ int
+-main(int argc, char *argv)
++main(int argc, char **argv)
+ {
+   xmlCheckVersion(20000);
+   return(0);

math/R-XML/patches/patch-configure.in

@@ -0,0 +1,13 @@
+$NetBSD: patch-configure.in,v 1.1 2013/06/13 14:27:50 joerg Exp $
+
+--- configure.in.orig	2013-06-13 11:02:41.000000000 +0000
++++ configure.in
+@@ -408,7 +408,7 @@ else   # -z "${LIBXML2}"
+ #include <libxml/parser.h>
+ #endif
+ int 
+-main(int argc, char *argv)
++main(int argc, char **argv)
+ {
+   xmlCheckVersion(20000);
+   return(0);

math/R-abind/DESCR

@@ -0,0 +1,4 @@
+Combine multi-dimensional arrays into a single array.  This is a
+generalization of cbind and rbind.  Works with vectors, matrices, and
+higher-dimensional arrays.  Also provides functions adrop, asub, and
+afill for manipulating, extracting and replacing data in arrays.

math/R-abind/Makefile

@@ -0,0 +1,16 @@
+# $NetBSD: Makefile,v 1.5 2012/04/15 14:55:50 brook Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/abind/
+COMMENT=	Combine multi-dimensional arrays
+LICENSE=	gnu-lgpl-v2
+
+R_PKGNAME=	abind
+R_PKGVER=	1.4-0
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-abind/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.2 2012/04/15 14:55:50 brook Exp $
+
+SHA1 (R/abind_1.4-0.tar.gz) = 93df0b3f0a57b8cba424354e5ec9779fc1bb3240
+RMD160 (R/abind_1.4-0.tar.gz) = 16fa9f565f41e380a8f7590508339d2ecb78e724
+Size (R/abind_1.4-0.tar.gz) = 19642 bytes

math/R-akima/DESCR

@@ -0,0 +1 @@
+Linear or cubic spline interpolation for irregular gridded data.

math/R-akima/Makefile

@@ -0,0 +1,26 @@
+# $NetBSD: Makefile,v 1.11 2012/04/15 21:58:24 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/akima/
+COMMENT=	Linear or cubic spline interpolation for irregular gridded data
+LICENSE=	acm-license
+
+R_PKGNAME=	akima
+R_PKGVER=	0.5-7
+
+# Note: the ACM license requires notification prior to distribution of
+# modified versions of this package.  If patches are required, then to
+# comply with this NO_BIN_ON_FTP and NO_SRC_ON_FTP must be defined.
+
+# Note: the ACM license requires prior arrangements to distribute the
+# software as part of a commercial product.
+NO_BIN_ON_CDROM=	# defined
+NO_SRC_ON_CDROM=	# defined
+
+USE_LANGUAGES=	fortran c
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-akima/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2012/04/15 15:09:26 brook Exp $
+
+SHA1 (R/akima_0.5-7.tar.gz) = 7ba0f9510b49f6fcd617e891aa129ee29935a4ab
+RMD160 (R/akima_0.5-7.tar.gz) = e45b7312483873cba622d561460a986b0a60c7eb
+Size (R/akima_0.5-7.tar.gz) = 185681 bytes

math/R-bitops/DESCR

@@ -0,0 +1 @@
+Functions for Bitwise operations on integer vectors.

math/R-bitops/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.1 2011/06/14 21:28:50 alnsn Exp $
+
+CATEGORIES=		math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=		alnsn@NetBSD.org
+HOMEPAGE=		${R_HOMEPAGE_BASE}/bitops/
+COMMENT=		Functions for Bitwise operations on integer vectors
+LICENSE=		gnu-gpl-v2
+
+R_PKGNAME=		bitops
+R_PKGVER=		1.0-4.1
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-bitops/buildlink3.mk

@@ -0,0 +1,13 @@
+# $NetBSD: buildlink3.mk,v 1.1 2011/06/14 21:28:50 alnsn Exp $
+
+BUILDLINK_TREE+=	Rbitops
+
+.if !defined(RBITOPS_BUILDLINK3_MK)
+RBITOPS_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.Rbitops+=	R-bitops>=1.0.4.1
+BUILDLINK_ABI_DEPENDS.Rbitops+=	R-bitops>=1.0.4.1
+BUILDLINK_PKGSRCDIR.Rbitops?=	../../math/R-bitops
+.endif # RBITOPS_BUILDLINK3_MK
+
+BUILDLINK_TREE+=	-Rbitops

math/R-bitops/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1 2011/06/14 21:28:50 alnsn Exp $
+
+SHA1 (R/bitops_1.0-4.1.tar.gz) = 29ab3f01440a5f51df04bebedfee663086659124
+RMD160 (R/bitops_1.0-4.1.tar.gz) = 4ad4bc0f676c14296fc78f7b4dc73584d0887ec3
+Size (R/bitops_1.0-4.1.tar.gz) = 8001 bytes

math/R-car/DESCR

@@ -0,0 +1,2 @@
+This package accompanies J. Fox and S. Weisberg, An R Companion to
+Applied Regression, Second Edition, Sage, 2011.

math/R-car/Makefile

@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.2 2012/04/15 15:15:48 brook Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/car/
+COMMENT=	Accompanies An R Companion to Applied Regression, 2nd Edition
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	car
+R_PKGVER=	2.0-12
+
+WRKSRC=		${WRKDIR}/car
+USE_LANGUAGES=	# none
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-car/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.2 2012/04/15 15:15:48 brook Exp $
+
+SHA1 (R/car_2.0-12.tar.gz) = 90a720288d61abf4e82789d0def2c71f32009cae
+RMD160 (R/car_2.0-12.tar.gz) = 8db66c65215c2022379716cc37a6b540f2011d33
+Size (R/car_2.0-12.tar.gz) = 319291 bytes

math/R-chron/DESCR

@@ -0,0 +1 @@
+Chronological objects which can handle dates and times.

math/R-chron/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.6 2012/04/15 15:18:34 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/chron/
+COMMENT=	Chronological objects which can handle dates and times
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	chron
+R_PKGVER=	2.3-42
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-chron/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.4 2012/04/15 15:18:34 brook Exp $
+
+SHA1 (R/chron_2.3-42.tar.gz) = 5e44e98c3c45de8c56028c35e263d1db16f01579
+RMD160 (R/chron_2.3-42.tar.gz) = e1fe5ae1d396af0ee6b27ab6aa4f0436e18a8f1a
+Size (R/chron_2.3-42.tar.gz) = 34806 bytes

math/R-circular/DESCR

@@ -0,0 +1,2 @@
+Circular Statistics, from "Topics in circular Statistics" (2001)
+S. Rao Jammalamadaka and A. SenGupta, World Scientific.

math/R-circular/Makefile

@@ -0,0 +1,21 @@
+# $NetBSD: Makefile,v 1.9 2012/08/14 17:07:57 asau Exp $
+
+CATEGORIES=	math
+PKGREVISION=	1
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/circular/
+COMMENT=	Circular Statistics, from "Topics in circular Statistics"
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	circular
+R_PKGVER=	0.4-3
+
+PKG_DESTDIR_SUPPORT=	none
+
+USE_LANGUAGES=	fortran c
+
+.include "../../devel/gettext-lib/buildlink3.mk"
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-circular/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.2 2012/04/15 15:20:52 brook Exp $
+
+SHA1 (R/circular_0.4-3.tar.gz) = 8fe7447795502347fc2d15ba02ac60bdd8363206
+RMD160 (R/circular_0.4-3.tar.gz) = 574662251ebe5d749f6a8dbe5fe4e7acc11fa48c
+Size (R/circular_0.4-3.tar.gz) = 152860 bytes

math/R-classInt/DESCR

@@ -0,0 +1,2 @@
+A package for choosing univariate class intervals for mapping or other
+graphics purposes.

math/R-classInt/Makefile

@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.6 2012/04/15 16:00:01 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/genetics/
+COMMENT=	Package for choosing univariate class intervals for graphics
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	classInt
+R_PKGVER=	0.1-17
+
+USE_LANGUAGES=	c fortran
+
+DEPENDS+=	R-e1071>=1.6:../../math/R-e1071
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-classInt/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2012/04/15 16:00:01 brook Exp $
+
+SHA1 (R/classInt_0.1-17.tar.gz) = 845758790eee6b2e56e0e431614b40e9c3d245c8
+RMD160 (R/classInt_0.1-17.tar.gz) = 4a6ea5ea5357daf49f9554074d65236df1bc2d85
+Size (R/classInt_0.1-17.tar.gz) = 18642 bytes

math/R-clim.pact/DESCR

@@ -0,0 +1,5 @@
+The package contains R functions for retrieving data, making climate
+analysis and downscaling of monthly mean and daily mean global climate
+scenarios.  The package is also described in the book
+'Empirical-Statistical Downscaling
+(http://www.worldscibooks.com/environsci/6908.html)

math/R-clim.pact/Makefile

@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.6 2012/04/15 16:15:31 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/clim.pact/
+COMMENT=	Climate analysis and downscaling for monthly and daily data
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	clim.pact
+R_PKGVER=	2.3-10
+
+DEPENDS+=	R-akima>=0.5.7:../../math/R-akima
+DEPENDS+=	R-ncdf>=1.6.6:../../math/R-ncdf
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-clim.pact/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2012/04/15 16:15:31 brook Exp $
+
+SHA1 (R/clim.pact_2.3-10.tar.gz) = e862068cda1141d078cb68c76f0f9b7167cdef13
+RMD160 (R/clim.pact_2.3-10.tar.gz) = a7cf28ecaeb7ca1b1c91e01d30cc0c6223afd5b1
+Size (R/clim.pact_2.3-10.tar.gz) = 5860859 bytes

math/R-combinat/DESCR

@@ -0,0 +1 @@
+Routines for combinatorics.

math/R-combinat/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.5 2012/04/15 13:16:35 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/combinat/
+COMMENT=	Routines for combinatorics
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	combinat
+R_PKGVER=	0.0-8
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-combinat/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2011/11/06 22:24:45 mishka Exp $
+
+SHA1 (R/combinat_0.0-8.tar.gz) = e6304b28245ee27747ded378406f64c106e8389b
+RMD160 (R/combinat_0.0-8.tar.gz) = eee75e95af8ada7987aa26336a1faa34aad5a2ca
+Size (R/combinat_0.0-8.tar.gz) = 7973 bytes

math/R-date/DESCR

@@ -0,0 +1 @@
+Functions for handling dates.

math/R-date/Makefile

@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.6 2012/04/15 15:22:37 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/date/
+COMMENT=	R functions for handling dates
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	date
+R_PKGVER=	1.2-32
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-date/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.4 2012/04/15 15:22:37 brook Exp $
+
+SHA1 (R/date_1.2-32.tar.gz) = c21982e2023af090f7f677c1c03050f1c4db7f75
+RMD160 (R/date_1.2-32.tar.gz) = a92157ee7ad60e9a0dbbe7c5fdce1ccd79628b46
+Size (R/date_1.2-32.tar.gz) = 9563 bytes

math/R-e1071/DESCR

@@ -0,0 +1,3 @@
+Functions for latent class analysis, short time Fourier transform,
+fuzzy clustering, support vector machines, shortest path computation,
+bagged clustering, naive Bayes classifier, ...

math/R-e1071/Makefile

@@ -0,0 +1,17 @@
+# $NetBSD: Makefile,v 1.3 2012/04/15 15:25:09 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/e1701/
+COMMENT=	Misc Functions of the Department of Statistics (e1071), TU Wien
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	e1071
+R_PKGVER=	1.6
+
+USE_LANGUAGES=	c c++
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-e1071/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.3 2012/04/15 15:25:09 brook Exp $
+
+SHA1 (R/e1071_1.6.tar.gz) = 96cd5d7643178580000ce515ca60816a61a5a9d2
+RMD160 (R/e1071_1.6.tar.gz) = fbe7841dc8ec8eb9d4b2ec409fa20a6a0bed1e29
+Size (R/e1071_1.6.tar.gz) = 425215 bytes

math/R-gdata/DESCR

@@ -0,0 +1 @@
+Various R programming tools for data manipulation.

math/R-gdata/Makefile

@@ -0,0 +1,21 @@
+# $NetBSD: Makefile,v 1.7 2013/05/31 12:41:21 wiz Exp $
+
+PKGREVISION=	2
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/gdata/
+COMMENT=	Various R programming tools for data manipulation
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	gdata
+R_PKGVER=	2.8.2
+
+DEPENDS+=	R-gtools>=2.6.2:../../math/R-gtools
+
+USE_TOOLS+=	perl:run
+REPLACE_PERL+=	inst/bin/*.bat inst/perl/*.pl
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-gdata/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.4 2012/04/15 16:12:28 brook Exp $
+
+SHA1 (R/gdata_2.8.2.tar.gz) = ddfd4befdc283eeda39aba14215a7cd428e1042b
+RMD160 (R/gdata_2.8.2.tar.gz) = 1be56ea4950349b85317b905aecb2143523ad4bd
+Size (R/gdata_2.8.2.tar.gz) = 631443 bytes

math/R-genetics/DESCR

@@ -0,0 +1,6 @@
+Classes and methods for handling genetic data. Includes classes to
+represent genotypes and haplotypes at single markers up to multiple
+markers on multiple chromosomes. Function include allele frequencies,
+flagging homo/heterozygotes, flagging carriers of certain alleles,
+estimating and testing for Hardy-Weinberg disequilibrium, estimating
+and testing for linkage disequilibrium, ...

math/R-genetics/Makefile

@@ -0,0 +1,24 @@
+# $NetBSD: Makefile,v 1.7 2013/05/31 12:41:21 wiz Exp $
+#
+
+PKGREVISION=	1
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/genetics/
+COMMENT=	Classes and methods for handling genetic data
+LICENSE=	gnu-gpl-v3
+
+USE_TOOLS+=	perl
+
+R_PKGNAME=	genetics
+R_PKGVER=	1.3.8
+
+DEPENDS+=	R-combinat>=0.0.8:../../math/R-combinat
+DEPENDS+=	R-gdata>=2.8.2:../../math/R-gdata
+DEPENDS+=	R-gtools>=2.6.2:../../math/R-gtools
+DEPENDS+=	R-mvtnorm>=0.9.9992:../../math/R-mvtnorm
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-genetics/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2013/01/24 02:24:15 wen Exp $
+
+SHA1 (R/genetics_1.3.8.tar.gz) = f1bd9f75da1aedf4aaa7d3ee81d422c25ba03e8f
+RMD160 (R/genetics_1.3.8.tar.gz) = cde22d63c019171360a9baee6a2843f731d96bb2
+Size (R/genetics_1.3.8.tar.gz) = 210785 bytes

math/R-geoR/DESCR

@@ -0,0 +1,2 @@
+Geostatistical analysis including likelihood-based and Bayesian
+methods.

math/R-geoR/Makefile

@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.9 2013/04/06 03:45:16 rodent Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/geoR/
+COMMENT=	Geostatistical analysis including likelihood-based & Bayesian methods
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	geoR
+R_PKGVER=	1.7-2
+
+DEPENDS+=	R-RandomFields>=2.0.54:../../math/R-RandomFields
+DEPENDS+=	R-sp>=0.9.98:../../math/R-sp
+DEPENDS+=	R-splancs>=2.01.31:../../math/R-splancs
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-geoR/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2012/04/01 18:09:54 brook Exp $
+
+SHA1 (R/geoR_1.7-2.tar.gz) = a3e47912f21381c088272a03c6a1bfb31c5bcc20
+RMD160 (R/geoR_1.7-2.tar.gz) = b1c61997ba692b1da063b42c20bec0af817de6ec
+Size (R/geoR_1.7-2.tar.gz) = 411279 bytes

math/R-geoRglm/DESCR

@@ -0,0 +1,4 @@
+Functions for inference in generalised linear spatial models.  The
+posterior and predictive inference is based on Markov chain Monte
+Carlo methods.  Package geoRglm is an extension to the package geoR,
+which must be installed first.

math/R-geoRglm/Makefile

@@ -0,0 +1,17 @@
+# $NetBSD: Makefile,v 1.1.1.1 2012/04/15 22:14:29 brook Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/geoRglm/
+COMMENT=	Generalised linear spatial models in R
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	geoRglm
+R_PKGVER=	0.9-2
+
+DEPENDS+=	R-geoR>=1.7.2:../../math/R-geoR
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-geoRglm/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1.1.1 2012/04/15 22:14:29 brook Exp $
+
+SHA1 (R/geoRglm_0.9-2.tar.gz) = e9e518619355d5866c8abd0e5583c0e07c7b31ba
+RMD160 (R/geoRglm_0.9-2.tar.gz) = fab25609324e9bb4e170c4ae57c2201a8cc05e94
+Size (R/geoRglm_0.9-2.tar.gz) = 192901 bytes

math/R-gstat/DESCR

@@ -0,0 +1,3 @@
+Variogram modelling; simple, ordinary and universal point or block
+(co)kriging, sequential Gaussian or indicator (co)simulation;
+variogram and variogram map plotting utility functions.

math/R-gstat/Makefile

@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.7 2013/01/24 01:51:13 wen Exp $
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/gstat/
+COMMENT=	Uni/multivariable geostatistical modelling, prediction and simulation
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	gstat
+R_PKGVER=	1.0-15
+
+DEPENDS+=	R-sp>=0.9.98:../../math/R-sp
+DEPENDS+=	R-spacetime>=1.0.0:../../math/R-spacetime
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"

math/R-gstat/distinfo

@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.5 2013/01/24 01:51:13 wen Exp $
+
+SHA1 (R/gstat_1.0-15.tar.gz) = 56b866ecd9db30a96756084f927ed878b1ee7745
+RMD160 (R/gstat_1.0-15.tar.gz) = 37db644464ea354e2df16c4b7d1e5b48e399e0c3
+Size (R/gstat_1.0-15.tar.gz) = 2029233 bytes