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Import of pkgsrc-2013Q2

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This commit is contained in:
Lionel Sambuc
2013-09-26 17:14:40 +02:00
commit 785076ae39
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math/py-numpy/DESCR Normal file
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NumPy is a general-purpose array-processing package designed to
efficiently manipulate large multi-dimensional arrays of arbitrary
records without sacrificing too much speed for small multi-dimensional
arrays. NumPy is built on the Numeric code base and adds features
introduced by numarray as well as an extended C-API and the ability to
create arrays of arbitrary type.
There are also basic facilities for discrete fourier transform,
basic linear algebra and random number generation.

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# $NetBSD: Makefile,v 1.25 2013/05/20 05:59:58 adam Exp $
DISTNAME= numpy-1.7.1
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=numpy/}
MAINTAINER= pkgsrc-users@NetBSD.org
HOMEPAGE= http://numpy.scipy.org/
COMMENT= Array processing for numbers, strings, records, and objects
LICENSE= modified-bsd
USE_LANGUAGES= c fortran
PYTHON_VERSIONS_INCLUDE_3X= yes
PLIST_SUBST+= PYVERSSUFFIX=${PYVERSSUFFIX}
MAKE_ENV+= ATLAS=None
REPLACE_PYTHON+= numpy/*.py
REPLACE_PYTHON+= numpy/compat/*.py
REPLACE_PYTHON+= numpy/core/*.py
REPLACE_PYTHON+= numpy/distutils/*.py
REPLACE_PYTHON+= numpy/distutils/tests/*.py
REPLACE_PYTHON+= numpy/distutils/tests/f2py_ext/*.py
REPLACE_PYTHON+= numpy/distutils/tests/f2py_f90_ext/*.py
REPLACE_PYTHON+= numpy/distutils/tests/gen_ext/*.py
REPLACE_PYTHON+= numpy/distutils/tests/pyrex_ext/*.py
REPLACE_PYTHON+= numpy/distutils/tests/swig_ext/*.py
REPLACE_PYTHON+= numpy/f2py/*.py
REPLACE_PYTHON+= numpy/f2py/docs/usersguide/*.py
REPLACE_PYTHON+= numpy/fft/tests/*.py
REPLACE_PYTHON+= numpy/ma/*.py
REPLACE_PYTHON+= numpy/matrixlib/*.py
REPLACE_PYTHON+= numpy/testing/*.py
SUBST_CLASSES+= numpy
SUBST_STAGE.numpy= post-patch
SUBST_FILES.numpy= numpy/f2py/setup.py numpy/f2py/setupscons.py
SUBST_SED.numpy= -e 's:/usr/bin/env %s:${PYTHONBIN}:'
SUBST_SED.numpy+= -e 's:%(os.path.basename(sys.executable))::'
# XXX Avoid picking up other compilers when installed
.include "../../mk/compiler.mk"
.if defined(PKGSRC_FORTRAN) && !empty(PKGSRC_FORTRAN:Mg95)
PYSETUPBUILDARGS+= --fcompiler=g95
.elif defined(PKGSRC_FORTRAN) && !empty(PKGSRC_FORTRAN:Mgfortran)
PYSETUPBUILDARGS+= --fcompiler=gnu95
.elif !empty(PKGSRC_COMPILER:Mgcc)
PYSETUPBUILDARGS+= --fcompiler=gnu
.endif
# This package bypasses the wrappers and calls the compilers directly when
# linking, so ensure that we pass through requisite options.
LDFLAGS+= ${_COMPILER_ABI_FLAG.${ABI}}
# This package also does its own linking of dependent packages, so we need
# to ensure that linker is called with the correct arguments.
SUBST_CLASSES+= linkabi
SUBST_STAGE.linkabi= post-patch
SUBST_FILES.linkabi= numpy/distutils/fcompiler/gnu.py
SUBST_SED.linkabi= -e 's,@COMPILER_ABI_FLAG@,${_COMPILER_ABI_FLAG.${ABI}},'
.include "../../mk/bsd.prefs.mk"
.if ${OPSYS} == "Darwin"
# to avoid '-bundle can't be used with -dynamiclib' error
BUILDLINK_TRANSFORM+= rm:-bundle
LDFLAGS+= -lpython
.endif
# needs devel/py-nose
#do-test:
# ${PYTHONBIN} -c "import numpy; numpy.test()"
.include "../../lang/python/application.mk"
.include "../../lang/python/distutils.mk"
.include "../../math/blas/buildlink3.mk"
.include "../../math/lapack/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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math/py-numpy/PLIST Normal file
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@comment $NetBSD: PLIST,v 1.11 2013/05/20 05:59:58 adam Exp $
bin/f2py${PYVERSSUFFIX}
${PYSITELIB}/${EGG_FILE}
${PYSITELIB}/numpy/__config__.py
${PYSITELIB}/numpy/__config__.pyc
${PYSITELIB}/numpy/__config__.pyo
${PYSITELIB}/numpy/__init__.py
${PYSITELIB}/numpy/__init__.pyc
${PYSITELIB}/numpy/__init__.pyo
${PYSITELIB}/numpy/_import_tools.py
${PYSITELIB}/numpy/_import_tools.pyc
${PYSITELIB}/numpy/_import_tools.pyo
${PYSITELIB}/numpy/add_newdocs.py
${PYSITELIB}/numpy/add_newdocs.pyc
${PYSITELIB}/numpy/add_newdocs.pyo
${PYSITELIB}/numpy/compat/__init__.py
${PYSITELIB}/numpy/compat/__init__.pyc
${PYSITELIB}/numpy/compat/__init__.pyo
${PYSITELIB}/numpy/compat/_inspect.py
${PYSITELIB}/numpy/compat/_inspect.pyc
${PYSITELIB}/numpy/compat/_inspect.pyo
${PYSITELIB}/numpy/compat/py3k.py
${PYSITELIB}/numpy/compat/py3k.pyc
${PYSITELIB}/numpy/compat/py3k.pyo
${PYSITELIB}/numpy/compat/setup.py
${PYSITELIB}/numpy/compat/setup.pyc
${PYSITELIB}/numpy/compat/setup.pyo
${PYSITELIB}/numpy/compat/setupscons.py
${PYSITELIB}/numpy/compat/setupscons.pyc
${PYSITELIB}/numpy/compat/setupscons.pyo
${PYSITELIB}/numpy/core/__init__.py
${PYSITELIB}/numpy/core/__init__.pyc
${PYSITELIB}/numpy/core/__init__.pyo
${PYSITELIB}/numpy/core/_dummy.so
${PYSITELIB}/numpy/core/_internal.py
${PYSITELIB}/numpy/core/_internal.pyc
${PYSITELIB}/numpy/core/_internal.pyo
${PYSITELIB}/numpy/core/_methods.py
${PYSITELIB}/numpy/core/_methods.pyc
${PYSITELIB}/numpy/core/_methods.pyo
${PYSITELIB}/numpy/core/arrayprint.py
${PYSITELIB}/numpy/core/arrayprint.pyc
${PYSITELIB}/numpy/core/arrayprint.pyo
${PYSITELIB}/numpy/core/defchararray.py
${PYSITELIB}/numpy/core/defchararray.pyc
${PYSITELIB}/numpy/core/defchararray.pyo
${PYSITELIB}/numpy/core/fromnumeric.py
${PYSITELIB}/numpy/core/fromnumeric.pyc
${PYSITELIB}/numpy/core/fromnumeric.pyo
${PYSITELIB}/numpy/core/function_base.py
${PYSITELIB}/numpy/core/function_base.pyc
${PYSITELIB}/numpy/core/function_base.pyo
${PYSITELIB}/numpy/core/generate_numpy_api.py
${PYSITELIB}/numpy/core/generate_numpy_api.pyc
${PYSITELIB}/numpy/core/generate_numpy_api.pyo
${PYSITELIB}/numpy/core/getlimits.py
${PYSITELIB}/numpy/core/getlimits.pyc
${PYSITELIB}/numpy/core/getlimits.pyo
${PYSITELIB}/numpy/core/include/numpy/__multiarray_api.h
${PYSITELIB}/numpy/core/include/numpy/__ufunc_api.h
${PYSITELIB}/numpy/core/include/numpy/_neighborhood_iterator_imp.h
${PYSITELIB}/numpy/core/include/numpy/_numpyconfig.h
${PYSITELIB}/numpy/core/include/numpy/arrayobject.h
${PYSITELIB}/numpy/core/include/numpy/arrayscalars.h
${PYSITELIB}/numpy/core/include/numpy/halffloat.h
${PYSITELIB}/numpy/core/include/numpy/multiarray_api.txt
${PYSITELIB}/numpy/core/include/numpy/ndarrayobject.h
${PYSITELIB}/numpy/core/include/numpy/ndarraytypes.h
${PYSITELIB}/numpy/core/include/numpy/noprefix.h
${PYSITELIB}/numpy/core/include/numpy/npy_3kcompat.h
${PYSITELIB}/numpy/core/include/numpy/npy_common.h
${PYSITELIB}/numpy/core/include/numpy/npy_cpu.h
${PYSITELIB}/numpy/core/include/numpy/npy_deprecated_api.h
${PYSITELIB}/numpy/core/include/numpy/npy_endian.h
${PYSITELIB}/numpy/core/include/numpy/npy_interrupt.h
${PYSITELIB}/numpy/core/include/numpy/npy_math.h
${PYSITELIB}/numpy/core/include/numpy/npy_no_deprecated_api.h
${PYSITELIB}/numpy/core/include/numpy/npy_os.h
${PYSITELIB}/numpy/core/include/numpy/numpyconfig.h
${PYSITELIB}/numpy/core/include/numpy/old_defines.h
${PYSITELIB}/numpy/core/include/numpy/oldnumeric.h
${PYSITELIB}/numpy/core/include/numpy/ufunc_api.txt
${PYSITELIB}/numpy/core/include/numpy/ufuncobject.h
${PYSITELIB}/numpy/core/include/numpy/utils.h
${PYSITELIB}/numpy/core/info.py
${PYSITELIB}/numpy/core/info.pyc
${PYSITELIB}/numpy/core/info.pyo
${PYSITELIB}/numpy/core/lib/libnpymath.a
${PYSITELIB}/numpy/core/lib/npy-pkg-config/mlib.ini
${PYSITELIB}/numpy/core/lib/npy-pkg-config/npymath.ini
${PYSITELIB}/numpy/core/machar.py
${PYSITELIB}/numpy/core/machar.pyc
${PYSITELIB}/numpy/core/machar.pyo
${PYSITELIB}/numpy/core/memmap.py
${PYSITELIB}/numpy/core/memmap.pyc
${PYSITELIB}/numpy/core/memmap.pyo
${PYSITELIB}/numpy/core/multiarray.so
${PYSITELIB}/numpy/core/multiarray_tests.so
${PYSITELIB}/numpy/core/numeric.py
${PYSITELIB}/numpy/core/numeric.pyc
${PYSITELIB}/numpy/core/numeric.pyo
${PYSITELIB}/numpy/core/numerictypes.py
${PYSITELIB}/numpy/core/numerictypes.pyc
${PYSITELIB}/numpy/core/numerictypes.pyo
${PYSITELIB}/numpy/core/records.py
${PYSITELIB}/numpy/core/records.pyc
${PYSITELIB}/numpy/core/records.pyo
${PYSITELIB}/numpy/core/scalarmath.so
${PYSITELIB}/numpy/core/scons_support.py
${PYSITELIB}/numpy/core/scons_support.pyc
${PYSITELIB}/numpy/core/scons_support.pyo
${PYSITELIB}/numpy/core/setup.py
${PYSITELIB}/numpy/core/setup.pyc
${PYSITELIB}/numpy/core/setup.pyo
${PYSITELIB}/numpy/core/setup_common.py
${PYSITELIB}/numpy/core/setup_common.pyc
${PYSITELIB}/numpy/core/setup_common.pyo
${PYSITELIB}/numpy/core/setupscons.py
${PYSITELIB}/numpy/core/setupscons.pyc
${PYSITELIB}/numpy/core/setupscons.pyo
${PYSITELIB}/numpy/core/shape_base.py
${PYSITELIB}/numpy/core/shape_base.pyc
${PYSITELIB}/numpy/core/shape_base.pyo
${PYSITELIB}/numpy/core/tests/data/astype_copy.pkl
${PYSITELIB}/numpy/core/tests/data/recarray_from_file.fits
${PYSITELIB}/numpy/core/tests/test_api.py
${PYSITELIB}/numpy/core/tests/test_arrayprint.py
${PYSITELIB}/numpy/core/tests/test_blasdot.py
${PYSITELIB}/numpy/core/tests/test_datetime.py
${PYSITELIB}/numpy/core/tests/test_defchararray.py
${PYSITELIB}/numpy/core/tests/test_dtype.py
${PYSITELIB}/numpy/core/tests/test_einsum.py
${PYSITELIB}/numpy/core/tests/test_errstate.py
${PYSITELIB}/numpy/core/tests/test_function_base.py
${PYSITELIB}/numpy/core/tests/test_getlimits.py
${PYSITELIB}/numpy/core/tests/test_half.py
${PYSITELIB}/numpy/core/tests/test_indexerrors.py
${PYSITELIB}/numpy/core/tests/test_indexing.py
${PYSITELIB}/numpy/core/tests/test_item_selection.py
${PYSITELIB}/numpy/core/tests/test_machar.py
${PYSITELIB}/numpy/core/tests/test_memmap.py
${PYSITELIB}/numpy/core/tests/test_multiarray.py
${PYSITELIB}/numpy/core/tests/test_multiarray_assignment.py
${PYSITELIB}/numpy/core/tests/test_nditer.py
${PYSITELIB}/numpy/core/tests/test_numeric.py
${PYSITELIB}/numpy/core/tests/test_numerictypes.py
${PYSITELIB}/numpy/core/tests/test_print.py
${PYSITELIB}/numpy/core/tests/test_records.py
${PYSITELIB}/numpy/core/tests/test_regression.py
${PYSITELIB}/numpy/core/tests/test_scalarmath.py
${PYSITELIB}/numpy/core/tests/test_shape_base.py
${PYSITELIB}/numpy/core/tests/test_ufunc.py
${PYSITELIB}/numpy/core/tests/test_umath.py
${PYSITELIB}/numpy/core/tests/test_umath_complex.py
${PYSITELIB}/numpy/core/tests/test_unicode.py
${PYSITELIB}/numpy/core/umath.so
${PYSITELIB}/numpy/core/umath_tests.so
${PYSITELIB}/numpy/ctypeslib.py
${PYSITELIB}/numpy/ctypeslib.pyc
${PYSITELIB}/numpy/ctypeslib.pyo
${PYSITELIB}/numpy/distutils/__config__.py
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${PYSITELIB}/numpy/distutils/command/bdist_rpm.py
${PYSITELIB}/numpy/distutils/command/bdist_rpm.pyc
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${PYSITELIB}/numpy/distutils/command/build_scripts.py
${PYSITELIB}/numpy/distutils/command/build_scripts.pyc
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${PYSITELIB}/numpy/distutils/command/config.py
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${PYSITELIB}/numpy/distutils/command/config_compiler.pyc
${PYSITELIB}/numpy/distutils/command/config_compiler.pyo
${PYSITELIB}/numpy/distutils/command/develop.py
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${PYSITELIB}/numpy/distutils/command/develop.pyo
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${PYSITELIB}/numpy/distutils/command/egg_info.pyc
${PYSITELIB}/numpy/distutils/command/egg_info.pyo
${PYSITELIB}/numpy/distutils/command/install.py
${PYSITELIB}/numpy/distutils/command/install.pyc
${PYSITELIB}/numpy/distutils/command/install.pyo
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${PYSITELIB}/numpy/distutils/command/install_clib.pyc
${PYSITELIB}/numpy/distutils/command/install_clib.pyo
${PYSITELIB}/numpy/distutils/command/install_data.py
${PYSITELIB}/numpy/distutils/command/install_data.pyc
${PYSITELIB}/numpy/distutils/command/install_data.pyo
${PYSITELIB}/numpy/distutils/command/install_headers.py
${PYSITELIB}/numpy/distutils/command/install_headers.pyc
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${PYSITELIB}/numpy/distutils/command/scons.py
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${PYSITELIB}/numpy/distutils/conv_template.py
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${PYSITELIB}/numpy/testing/utils.pyc
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${PYSITELIB}/numpy/tests/test_ctypeslib.py
${PYSITELIB}/numpy/tests/test_matlib.py
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17
math/py-numpy/buildlink3.mk Normal file
View File

@@ -0,0 +1,17 @@
# $NetBSD: buildlink3.mk,v 1.3 2009/03/20 19:24:58 joerg Exp $
BUILDLINK_TREE+= pynumpy
.if !defined(PY_NUMPY_BUILDLINK3_MK)
PY_NUMPY_BUILDLINK3_MK:=
.include "../../lang/python/pyversion.mk"
BUILDLINK_API_DEPENDS.pynumpy+= ${PYPKGPREFIX}-numpy>=1.0
BUILDLINK_PKGSRCDIR.pynumpy?= ../../math/py-numpy
.include "../../math/blas/buildlink3.mk"
.include "../../math/lapack/buildlink3.mk"
.endif # PY_NUMPY_BUILDLINK3_MK
BUILDLINK_TREE+= -pynumpy

10
math/py-numpy/distinfo Normal file
View File

@@ -0,0 +1,10 @@
$NetBSD: distinfo,v 1.11 2013/05/20 05:59:58 adam Exp $
SHA1 (numpy-1.7.1.tar.gz) = 11d878214d11a25e05a24f6b27e2b838815a2588
RMD160 (numpy-1.7.1.tar.gz) = 7d46f2773beb8b8e804e8b813753fd1764cda13b
Size (numpy-1.7.1.tar.gz) = 2838240 bytes
SHA1 (patch-aa) = ca3c59f9fe4c94272a190ab794d195799acdaa37
SHA1 (patch-ab) = c500abba63c1f2464c4db1b04c9a72f41744d5ae
SHA1 (patch-numpy_distutils_ccompiler.py) = 7e14f10537abbb63dacddd818f66c66e202da95e
SHA1 (patch-numpy_distutils_fcompiler_g95.py) = a45933022149d7a6ccac5f50d66afc6038d6ed95
SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = 25453ef02b0fa46897e974761eb6137a647794bf

13
math/py-numpy/patches/patch-aa Normal file
View File

@@ -0,0 +1,13 @@
$NetBSD: patch-aa,v 1.3 2013/05/20 05:59:58 adam Exp $
--- numpy/distutils/fcompiler/__init__.py.orig 2013-04-07 05:04:05.000000000 +0000
+++ numpy/distutils/fcompiler/__init__.py
@@ -713,7 +713,7 @@ _default_compilers = (
('irix.*', ('mips','gnu','gnu95',)),
('aix.*', ('ibm','gnu','gnu95',)),
# os.name mappings
- ('posix', ('gnu','gnu95',)),
+ ('posix', ('gnu','gnu95','g95',)),
('nt', ('gnu','gnu95',)),
('mac', ('gnu95','gnu','pg')),
)

13
math/py-numpy/patches/patch-ab Normal file
View File

@@ -0,0 +1,13 @@
$NetBSD: patch-ab,v 1.2 2013/05/20 05:59:58 adam Exp $
--- numpy/linalg/lapack_litemodule.c.orig 2008-05-26 19:39:50.000000000 +1200
+++ numpy/linalg/lapack_litemodule.c
@@ -17,6 +17,8 @@ typedef struct { float r, i; } f2c_compl
typedef struct { double r, i; } f2c_doublecomplex;
/* typedef long int (*L_fp)(); */
+int FNAME(MAIN_)() { return 0; }
+
extern int FNAME(dgeev)(char *jobvl, char *jobvr, int *n,
double a[], int *lda, double wr[], double wi[],
double vl[], int *ldvl, double vr[], int *ldvr,

14
math/py-numpy/patches/patch-numpy_distutils_ccompiler.py Normal file
View File

@@ -0,0 +1,14 @@
$NetBSD: patch-numpy_distutils_ccompiler.py,v 1.1 2013/05/20 05:59:58 adam Exp $
Hack: use compiler with CFLAGS for linking executables.
--- numpy/distutils/ccompiler.py.orig 2013-05-19 19:28:28.000000000 +0000
+++ numpy/distutils/ccompiler.py
@@ -199,6 +199,7 @@ def CCompiler_compile(self, sources, out
src = cyg2win32(src)
self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
else:
+ self.linker_exe = ccomp
for obj, (src, ext) in build.items():
self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)

19
math/py-numpy/patches/patch-numpy_distutils_fcompiler_g95.py Normal file
View File

@@ -0,0 +1,19 @@
$NetBSD: patch-numpy_distutils_fcompiler_g95.py,v 1.1 2011/12/20 16:38:30 joerg Exp $
Band aid to make sure that pic_flags is actually used.
--- numpy/distutils/fcompiler/g95.py.orig 2010-04-18 10:06:17.000000000 +0000
+++ numpy/distutils/fcompiler/g95.py
@@ -18,9 +18,9 @@ class G95FCompiler(FCompiler):
executables = {
'version_cmd' : ["<F90>", "--version"],
- 'compiler_f77' : ["g95", "-ffixed-form"],
- 'compiler_fix' : ["g95", "-ffixed-form"],
- 'compiler_f90' : ["g95"],
+ 'compiler_f77' : ["g95", "-ffixed-form", "-fpic"],
+ 'compiler_fix' : ["g95", "-ffixed-form", "-fpic"],
+ 'compiler_f90' : ["g95", "-fpic"],
'linker_so' : ["<F90>","-shared"],
'archiver' : ["ar", "-cr"],
'ranlib' : ["ranlib"]

35
math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py Normal file
View File

@@ -0,0 +1,35 @@
$NetBSD: patch-numpy_distutils_fcompiler_gnu.py,v 1.4 2013/02/21 10:59:39 jperkin Exp $
Do not run a shell command when it is "None".
Linker needs -shared explictly (at least with GCC 4.7 on SunOS), plus
any ABI flags as appropriate.
--- numpy/distutils/fcompiler/gnu.py.orig 2011-09-13 20:39:16.000000000 +0000
+++ numpy/distutils/fcompiler/gnu.py
@@ -70,7 +70,7 @@ class GnuFCompiler(FCompiler):
'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
'compiler_f90' : None, # Use --fcompiler=gnu95 for f90 codes
'compiler_fix' : None,
- 'linker_so' : [None, "-g", "-Wall"],
+ 'linker_so' : [None, "-g", "-Wall", "-shared", "@COMPILER_ABI_FLAG@"],
'archiver' : ["ar", "-cr"],
'ranlib' : ["ranlib"],
'linker_exe' : [None, "-g", "-Wall"]
@@ -255,7 +255,7 @@ class Gnu95FCompiler(GnuFCompiler):
'compiler_f90' : [None, "-Wall", "-fno-second-underscore"] + _EXTRAFLAGS,
'compiler_fix' : [None, "-Wall", "-ffixed-form",
"-fno-second-underscore"] + _EXTRAFLAGS,
- 'linker_so' : ["<F90>", "-Wall"],
+ 'linker_so' : ["<F90>", "-Wall", "-shared", "@COMPILER_ABI_FLAG@"],
'archiver' : ["ar", "-cr"],
'ranlib' : ["ranlib"],
'linker_exe' : [None, "-Wall"]
@@ -268,7 +268,7 @@ class Gnu95FCompiler(GnuFCompiler):
def _universal_flags(self, cmd):
"""Return a list of -arch flags for every supported architecture."""
- if not sys.platform == 'darwin':
+ if not sys.platform == 'darwin' or cmd == None:
return []
arch_flags = []
# get arches the C compiler gets.