Import of pkgsrc-2015Q3

parallel/clusterit/Makefile

@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.20 2012/09/11 20:36:17 asau Exp $
+# $NetBSD: Makefile,v 1.21 2015/08/18 07:31:16 wiz Exp $
 
 DISTNAME=		clusterit-2.5
-PKGREVISION=		1
+PKGREVISION=		2
 CATEGORIES=		parallel
 MASTER_SITES=		${MASTER_SITE_SOURCEFORGE:=clusterit/}
 

parallel/hwloc/Makefile

@@ -1,11 +1,9 @@
-# $NetBSD: Makefile,v 1.15 2014/05/05 00:48:16 ryoon Exp $
+# $NetBSD: Makefile,v 1.17 2015/08/18 07:31:16 wiz Exp $
 
-DISTNAME=	hwloc-1.7.1
-#PKGREVISION=	1
+DISTNAME=	hwloc-1.11.0
 PKGREVISION=	1
 CATEGORIES=	parallel
-MASTER_SITES=	http://www.open-mpi.org/software/hwloc/v1.7/downloads/
-EXTRACT_SUFX=	.tar.bz2
+MASTER_SITES=	http://www.open-mpi.org/software/hwloc/v1.11/downloads/
 
 MAINTAINER=	asau@inbox.ru
 HOMEPAGE=	http://www.open-mpi.org/projects/hwloc/

parallel/hwloc/PLIST

@@ -1,13 +1,16 @@
-@comment $NetBSD: PLIST,v 1.3 2013/04/15 20:46:17 adam Exp $
+@comment $NetBSD: PLIST,v 1.4 2015/08/15 21:27:46 asau Exp $
 bin/hwloc-annotate
 bin/hwloc-assembler
 bin/hwloc-assembler-remote
 bin/hwloc-bind
 bin/hwloc-calc
+bin/hwloc-compress-dir
+bin/hwloc-diff
 bin/hwloc-distances
 bin/hwloc-distrib
 bin/hwloc-info
 bin/hwloc-ls
+bin/hwloc-patch
 bin/hwloc-ps
 bin/lstopo
 bin/lstopo-no-graphics
@@ -16,8 +19,11 @@ include/hwloc/autogen/config.h
 include/hwloc/bitmap.h
 include/hwloc/cuda.h
 include/hwloc/cudart.h
+include/hwloc/deprecated.h
+include/hwloc/diff.h
 include/hwloc/gl.h
 include/hwloc/helper.h
+include/hwloc/inlines.h
 include/hwloc/intel-mic.h
 include/hwloc/myriexpress.h
 include/hwloc/nvml.h
@@ -32,10 +38,13 @@ man/man1/hwloc-assembler-remote.1
 man/man1/hwloc-assembler.1
 man/man1/hwloc-bind.1
 man/man1/hwloc-calc.1
+man/man1/hwloc-compress-dir.1
+man/man1/hwloc-diff.1
 man/man1/hwloc-distances.1
 man/man1/hwloc-distrib.1
 man/man1/hwloc-info.1
 man/man1/hwloc-ls.1
+man/man1/hwloc-patch.1
 man/man1/hwloc-ps.1
 man/man1/lstopo-no-graphics.1
 man/man1/lstopo.1
@@ -44,6 +53,7 @@ man/man3/HWLOC_CPUBIND_NOMEMBIND.3
 man/man3/HWLOC_CPUBIND_PROCESS.3
 man/man3/HWLOC_CPUBIND_STRICT.3
 man/man3/HWLOC_CPUBIND_THREAD.3
+man/man3/HWLOC_DISTRIB_FLAG_REVERSE.3
 man/man3/HWLOC_MEMBIND_BIND.3
 man/man3/HWLOC_MEMBIND_DEFAULT.3
 man/man3/HWLOC_MEMBIND_FIRSTTOUCH.3
@@ -67,7 +77,7 @@ man/man3/HWLOC_OBJ_CORE.3
 man/man3/HWLOC_OBJ_GROUP.3
 man/man3/HWLOC_OBJ_MACHINE.3
 man/man3/HWLOC_OBJ_MISC.3
-man/man3/HWLOC_OBJ_NODE.3
+man/man3/HWLOC_OBJ_NUMANODE.3
 man/man3/HWLOC_OBJ_OSDEV_BLOCK.3
 man/man3/HWLOC_OBJ_OSDEV_COPROC.3
 man/man3/HWLOC_OBJ_OSDEV_DMA.3
@@ -75,14 +85,20 @@ man/man3/HWLOC_OBJ_OSDEV_GPU.3
 man/man3/HWLOC_OBJ_OSDEV_NETWORK.3
 man/man3/HWLOC_OBJ_OSDEV_OPENFABRICS.3
 man/man3/HWLOC_OBJ_OS_DEVICE.3
+man/man3/HWLOC_OBJ_PACKAGE.3
 man/man3/HWLOC_OBJ_PCI_DEVICE.3
 man/man3/HWLOC_OBJ_PU.3
-man/man3/HWLOC_OBJ_SOCKET.3
 man/man3/HWLOC_OBJ_SYSTEM.3
 man/man3/HWLOC_OBJ_TYPE_MAX.3
 man/man3/HWLOC_RESTRICT_FLAG_ADAPT_DISTANCES.3
 man/man3/HWLOC_RESTRICT_FLAG_ADAPT_IO.3
 man/man3/HWLOC_RESTRICT_FLAG_ADAPT_MISC.3
+man/man3/HWLOC_TOPOLOGY_DIFF_APPLY_REVERSE.3
+man/man3/HWLOC_TOPOLOGY_DIFF_OBJ_ATTR.3
+man/man3/HWLOC_TOPOLOGY_DIFF_OBJ_ATTR_INFO.3
+man/man3/HWLOC_TOPOLOGY_DIFF_OBJ_ATTR_NAME.3
+man/man3/HWLOC_TOPOLOGY_DIFF_OBJ_ATTR_SIZE.3
+man/man3/HWLOC_TOPOLOGY_DIFF_TOO_COMPLEX.3
 man/man3/HWLOC_TOPOLOGY_FLAG_ICACHES.3
 man/man3/HWLOC_TOPOLOGY_FLAG_IO_BRIDGES.3
 man/man3/HWLOC_TOPOLOGY_FLAG_IO_DEVICES.3
@@ -178,8 +194,8 @@ man/man3/hwloc_cudart_get_device_pcidev.3
 man/man3/hwloc_custom_insert_group_object_by_parent.3
 man/man3/hwloc_custom_insert_topology.3
 man/man3/hwloc_distances_s.3
-man/man3/hwloc_distribute.3
-man/man3/hwloc_distributev.3
+man/man3/hwloc_distrib.3
+man/man3/hwloc_distrib_flags_e.3
 man/man3/hwloc_export_obj_userdata.3
 man/man3/hwloc_export_obj_userdata_base64.3
 man/man3/hwloc_free.3
@@ -252,6 +268,7 @@ man/man3/hwloc_ibv_get_device_osdev_by_name.3
 man/man3/hwloc_intel_mic_get_device_cpuset.3
 man/man3/hwloc_intel_mic_get_device_osdev_by_index.3
 man/man3/hwloc_linux_get_tid_cpubind.3
+man/man3/hwloc_linux_get_tid_last_cpu_location.3
 man/man3/hwloc_linux_parse_cpumap_file.3
 man/man3/hwloc_linux_set_tid_cpubind.3
 man/man3/hwloc_membind_flags_t.3
@@ -287,10 +304,9 @@ man/man3/hwloc_obj_memory_s.3
 man/man3/hwloc_obj_memory_s_hwloc_obj_memory_page_type_s.3
 man/man3/hwloc_obj_osdev_type_e.3
 man/man3/hwloc_obj_osdev_type_t.3
-man/man3/hwloc_obj_snprintf.3
 man/man3/hwloc_obj_t.3
-man/man3/hwloc_obj_type_of_string.3
 man/man3/hwloc_obj_type_snprintf.3
+man/man3/hwloc_obj_type_sscanf.3
 man/man3/hwloc_obj_type_string.3
 man/man3/hwloc_obj_type_t.3
 man/man3/hwloc_opencl_get_device_cpuset.3
@@ -309,7 +325,21 @@ man/man3/hwloc_set_thread_cpubind.3
 man/man3/hwloc_topology_check.3
 man/man3/hwloc_topology_cpubind_support.3
 man/man3/hwloc_topology_destroy.3
+man/man3/hwloc_topology_diff_apply.3
+man/man3/hwloc_topology_diff_apply_flags_e.3
+man/man3/hwloc_topology_diff_build.3
+man/man3/hwloc_topology_diff_destroy.3
+man/man3/hwloc_topology_diff_export_xml.3
+man/man3/hwloc_topology_diff_export_xmlbuffer.3
+man/man3/hwloc_topology_diff_load_xml.3
+man/man3/hwloc_topology_diff_load_xmlbuffer.3
+man/man3/hwloc_topology_diff_obj_attr_type_e.3
+man/man3/hwloc_topology_diff_obj_attr_u.3
+man/man3/hwloc_topology_diff_type_e.3
+man/man3/hwloc_topology_diff_u.3
 man/man3/hwloc_topology_discovery_support.3
+man/man3/hwloc_topology_dup.3
+man/man3/hwloc_topology_export_synthetic.3
 man/man3/hwloc_topology_export_xml.3
 man/man3/hwloc_topology_export_xmlbuffer.3
 man/man3/hwloc_topology_flags_e.3
@@ -320,9 +350,9 @@ man/man3/hwloc_topology_get_complete_nodeset.3
 man/man3/hwloc_topology_get_depth.3
 man/man3/hwloc_topology_get_flags.3
 man/man3/hwloc_topology_get_online_cpuset.3
-man/man3/hwloc_topology_get_support.3
 man/man3/hwloc_topology_get_topology_cpuset.3
 man/man3/hwloc_topology_get_topology_nodeset.3
+man/man3/hwloc_topology_get_userdata.3
 man/man3/hwloc_topology_ignore_all_keep_structure.3
 man/man3/hwloc_topology_ignore_type.3
 man/man3/hwloc_topology_ignore_type_keep_structure.3
@@ -339,6 +369,7 @@ man/man3/hwloc_topology_set_flags.3
 man/man3/hwloc_topology_set_fsroot.3
 man/man3/hwloc_topology_set_pid.3
 man/man3/hwloc_topology_set_synthetic.3
+man/man3/hwloc_topology_set_userdata.3
 man/man3/hwloc_topology_set_userdata_export_callback.3
 man/man3/hwloc_topology_set_userdata_import_callback.3
 man/man3/hwloc_topology_set_xml.3
@@ -349,42 +380,39 @@ man/man3/hwlocality_advanced_io.3
 man/man3/hwlocality_api_version.3
 man/man3/hwlocality_bitmap.3
 man/man3/hwlocality_configuration.3
-man/man3/hwlocality_conversion.3
 man/man3/hwlocality_cpubinding.3
 man/man3/hwlocality_creation.3
 man/man3/hwlocality_cuda.3
 man/man3/hwlocality_cudart.3
 man/man3/hwlocality_custom.3
+man/man3/hwlocality_diff.3
 man/man3/hwlocality_distances.3
 man/man3/hwlocality_gl.3
 man/man3/hwlocality_glibc_sched.3
-man/man3/hwlocality_helper_binding.3
-man/man3/hwlocality_helper_cpuset.3
+man/man3/hwlocality_helper_ancestors.3
+man/man3/hwlocality_helper_distribute.3
 man/man3/hwlocality_helper_find_cache.3
 man/man3/hwlocality_helper_find_covering.3
-man/man3/hwlocality_helper_find_coverings.3
 man/man3/hwlocality_helper_find_inside.3
-man/man3/hwlocality_helper_nodeset.3
+man/man3/hwlocality_helper_find_misc.3
 man/man3/hwlocality_helper_nodeset_convert.3
-man/man3/hwlocality_helper_traversal.3
-man/man3/hwlocality_helper_traversal_basic.3
-man/man3/hwlocality_helper_types.3
-man/man3/hwlocality_information.3
+man/man3/hwlocality_helper_topology_sets.3
 man/man3/hwlocality_intel_mic.3
+man/man3/hwlocality_levels.3
 man/man3/hwlocality_linux.3
 man/man3/hwlocality_linux_libnuma_bitmask.3
 man/man3/hwlocality_linux_libnuma_ulongs.3
 man/man3/hwlocality_membinding.3
 man/man3/hwlocality_myriexpress.3
 man/man3/hwlocality_nvml.3
+man/man3/hwlocality_object_sets.3
+man/man3/hwlocality_object_strings.3
+man/man3/hwlocality_object_types.3
 man/man3/hwlocality_objects.3
 man/man3/hwlocality_opencl.3
 man/man3/hwlocality_openfabrics.3
-man/man3/hwlocality_sets.3
+man/man3/hwlocality_syntheticexport.3
 man/man3/hwlocality_tinker.3
-man/man3/hwlocality_topology.3
-man/man3/hwlocality_traversal.3
-man/man3/hwlocality_types.3
 man/man3/hwlocality_xmlexport.3
 man/man7/hwloc.7
 share/doc/hwloc/hwloc-a4.pdf

parallel/hwloc/distinfo

@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2013/07/16 16:25:32 manu Exp $
+$NetBSD: distinfo,v 1.7 2015/08/15 21:27:46 asau Exp $
 
-SHA1 (hwloc-1.7.1.tar.bz2) = 7bb4e6c68d1c24f881d3f7ddf0682b50622351c8
-RMD160 (hwloc-1.7.1.tar.bz2) = 04032437ed3edbf527430bf79f7a0471d572b288
-Size (hwloc-1.7.1.tar.bz2) = 3214808 bytes
+SHA1 (hwloc-1.11.0.tar.gz) = ef23a4b451fce4ff8e231caec095f3da94f7d40d
+RMD160 (hwloc-1.11.0.tar.gz) = 4db1bccbf3888a08354cffeefe63f3da6cc02334
+Size (hwloc-1.11.0.tar.gz) = 4392313 bytes

parallel/mpi-ch/Makefile

@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.79 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.80 2015/09/23 12:02:50 joerg Exp $
 
 DISTNAME=	mpich-3.0.4
 PKGREVISION=	3
@@ -16,6 +16,8 @@ DEPENDS+=	bash-[0-9]*:../../shells/bash
 MPI_PREFIX=		${LOCALBASE}
 INSTALLATION_PREFIX=	${MPI_PREFIX}
 
+OVERRIDE_DIRDEPTH=	3
+
 USE_LANGUAGES=		c c++
 USE_LIBTOOL=		yes
 USE_TOOLS+=		perl:run

parallel/sge/distinfo

@@ -1,4 +1,4 @@
-$NetBSD: distinfo,v 1.18 2014/01/14 10:21:39 markd Exp $
+$NetBSD: distinfo,v 1.19 2015/06/29 21:44:33 markd Exp $
 
 SHA1 (sge-8.1.6.tar.gz) = 8348a543c736ed4f1c36cf1e8242eeb1a61033df
 RMD160 (sge-8.1.6.tar.gz) = 231f4d100722c7a99a92e0b9b989125e5d15f295
@@ -14,3 +14,4 @@ SHA1 (patch-source-utilbin_Makefile) = 0a6fa06e71140ed8e74ebe0e5e37a4a3a515391b
 SHA1 (patch-source_3rdparty_sge_depend_def.h) = 92ad1ef5d0cf237fa083a262d38c67828593f679
 SHA1 (patch-source_libs_comm_cl_ssl_framework.c) = 230c2a510b52516d9eea934b8c797141167a0b6d
 SHA1 (patch-source_libs_uti_sge__loadmem.c) = d781009ee8efbfa210a698c885f0aab51ae96818
+SHA1 (patch-source_util_arch) = c544eca206d2b260ed881f5112bedde68ac5029a

parallel/sge/patches/patch-source_util_arch

@@ -0,0 +1,15 @@
+$NetBSD: patch-source_util_arch,v 1.1 2015/06/29 21:44:33 markd Exp $
+
+Deal with linux 4.x
+
+--- source/dist/util/arch.orig	2013-10-28 16:22:53.000000000 +0000
++++ source/dist/util/arch
+@@ -212,7 +212,7 @@ Linux)
+    # http://sourceware.org/git/?p=glibc.git;a=blob_plain;f=FAQ;hb=HEAD
+    if [ "$unsupported" != "UNSUPPORTED-" ]; then
+       case $osrelease in
+-      2.4.*|2.6.*|3.*)
++      2.4.*|2.6.*|3.*|4.*)
+          # verify the GNU C lib version
+          # we expect libc version to be
+          # >= 2.3 - this is our supported lx-* platform

parallel/slurm/Makefile

@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.16 2015/06/12 10:50:55 wiz Exp $
+# $NetBSD: Makefile,v 1.17 2015/08/18 07:31:16 wiz Exp $
 
 DISTNAME=	slurm-2.6.4
-PKGREVISION=	6
+PKGREVISION=	7
 CATEGORIES=	parallel
 MASTER_SITES=	http://www.schedmd.com/download/archive/ \
 		http://www.schedmd.com/download/latest/ \