Import of pkgsrc-2015Q2
This commit is contained in:
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# $NetBSD: Makefile,v 1.13 2013/01/19 20:23:34 riastradh Exp $
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# $NetBSD: Makefile,v 1.14 2015/04/25 14:20:26 tnn Exp $
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#
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DISTNAME= azara-2.7-src
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PKGNAME= azara-2.7
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PKGREVISION= 5
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PKGREVISION= 6
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CATEGORIES= biology
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MASTER_SITES= http://www.ccpn.ac.uk/download/azara/
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@@ -1,7 +1,8 @@
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# $NetBSD: Makefile,v 1.29 2014/07/17 12:12:26 wen Exp $
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# $NetBSD: Makefile,v 1.30 2015/06/12 10:48:25 wiz Exp $
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DISTNAME= BioPerl-1.6.924
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PKGNAME= ${DISTNAME:tl}
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PKGREVISION= 1
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CATEGORIES= biology perl5
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MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
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@@ -1,8 +1,8 @@
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# $NetBSD: Makefile,v 1.7 2014/05/29 23:35:16 wiz Exp $
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# $NetBSD: Makefile,v 1.8 2015/06/12 10:48:25 wiz Exp $
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#
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DISTNAME= bodr-9
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PKGREVISION= 5
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PKGREVISION= 6
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bodr/}
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@@ -1,7 +1,7 @@
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# $NetBSD: Makefile,v 1.51 2014/10/09 14:06:00 wiz Exp $
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# $NetBSD: Makefile,v 1.52 2015/04/25 14:20:26 tnn Exp $
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DISTNAME= chemtool-1.6.14
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PKGREVISION= 1
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PKGREVISION= 2
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CATEGORIES= biology
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MASTER_SITES= http://ruby.chemie.uni-freiburg.de/~martin/chemtool/
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@@ -1,8 +1,8 @@
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# $NetBSD: Makefile,v 1.27 2014/05/29 23:35:17 wiz Exp $
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# $NetBSD: Makefile,v 1.29 2015/06/12 10:48:26 wiz Exp $
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#
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DISTNAME= gnome-chemistry-utils-0.12.13
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PKGREVISION= 16
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PKGREVISION= 18
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CATEGORIES= biology
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MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/
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EXTRACT_SUFX= .tar.bz2
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@@ -1,8 +1,8 @@
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# $NetBSD: Makefile,v 1.14 2014/05/29 23:35:17 wiz Exp $
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# $NetBSD: Makefile,v 1.15 2015/06/12 10:48:26 wiz Exp $
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#
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DISTNAME= gromacs-4.5.5
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PKGREVISION= 4
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PKGREVISION= 5
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
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@@ -1,4 +1,4 @@
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# $NetBSD: Makefile,v 1.7 2012/09/11 20:32:13 asau Exp $
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# $NetBSD: Makefile,v 1.8 2015/06/27 07:08:13 dholland Exp $
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#
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DISTNAME= mopac7
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@@ -25,6 +25,11 @@ PKG_FC= f2c-f77
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INSTALLATION_DIRS= bin share/mopac7/sample
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.include "../../mk/compiler.mk"
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.if !empty(PKGSRC_COMPILER:Mclang) || !empty(PKGSRC_COMPILER:Mgcc)
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ALL_ENV+= PKGSRC_FFLAGS=-freal-loops
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.endif
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pre-build:
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cp ${WRKSRC}/esp.rof ${WRKSRC}/esp.f
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rm -f ${WRKSRC}/Makefile
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@@ -8,7 +8,7 @@
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# make clean Clean up disk to minimum config
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#
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#F77 =
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FFLAGS = -O2 -w
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FFLAGS = -O2 -w $(PKGSRC_FFLAGS)
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HDRS = SIZES
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SRCS := $(shell ls *.f)
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CSRCS := $(shell ls *.c)
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@@ -1,7 +1,7 @@
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# $NetBSD: Makefile,v 1.9 2014/12/11 22:06:08 joerg Exp $
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# $NetBSD: Makefile,v 1.10 2015/06/12 10:48:26 wiz Exp $
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DISTNAME= mpqc-2.3.1
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PKGREVISION= 3
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PKGREVISION= 4
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mpqc/}
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EXTRACT_SUFX= .tar.bz2
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@@ -1,9 +1,9 @@
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# $NetBSD: Makefile,v 1.22 2014/05/29 23:35:17 wiz Exp $
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# $NetBSD: Makefile,v 1.23 2015/06/12 10:48:26 wiz Exp $
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#
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DISTNAME= MUMmer3.20
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PKGNAME= mummer-3.20
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PKGREVISION= 3
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PKGREVISION= 4
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/}
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@@ -1,7 +1,8 @@
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# $NetBSD: Makefile,v 1.24 2014/11/21 22:14:52 joerg Exp $
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# $NetBSD: Makefile,v 1.25 2015/04/25 14:20:26 tnn Exp $
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#
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DISTNAME= openbabel-2.3.2
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PKGREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=openbabel/}
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@@ -1,8 +1,8 @@
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# $NetBSD: Makefile,v 1.2 2014/05/29 23:35:17 wiz Exp $
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# $NetBSD: Makefile,v 1.3 2015/06/12 10:48:26 wiz Exp $
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DISTNAME= Bio-ASN1-EntrezGene-1.70
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PKGNAME= p5-${DISTNAME}
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PKGREVISION= 1
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PKGREVISION= 2
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CATEGORIES= biology perl5
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MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
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@@ -1,9 +1,9 @@
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# $NetBSD: Makefile,v 1.23 2014/05/09 07:36:55 wiz Exp $
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# $NetBSD: Makefile,v 1.24 2015/04/25 14:20:26 tnn Exp $
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DISTNAME= pymol-v1.5.0.1
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PKGNAME= ${PYPKGPREFIX}-${DISTNAME:S/pymol-v/mol-/}
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EGG_NAME= pymol-1.5.0.1
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PKGREVISION= 3
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PKGREVISION= 4
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=pymol/}
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EXTRACT_SUFX= .tar.bz2
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