Lionel Sambuc
b290512265
Some values which are fixed by the docker compose file should not be set as variables, and hardcoded everywhere as required. This also untangles the use of the variables DB_HOST and DB_PORT to be only about the exposed hostname and port, whenever the DB engine is exposed on the server interface.
149 lines
5.0 KiB
Bash
149 lines
5.0 KiB
Bash
: ${SHOW_SETTINGS:=false}
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#############################################################################
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# DATABASES
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# Service Parameters
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: ${DB_IMAGE:="hbpmip/postgresraw"}
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: ${DB_VERSION:=":v1.2"}
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: ${DB_HOST:="db"} # External hostname, if exposed
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: ${DB_PORT:="31432"} # External port, if exposed
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: ${DB_DATA:="${PWD}/postgres"}
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: ${DB_DATASETS:="${PWD}/datasets"}
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: ${DB_USER_ADMIN:="postgres"}
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: ${DB_PASSWORD_ADMIN:="test"}
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: ${DB_UI_IMAGE:="hbpmip/postgresraw-ui"}
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: ${DB_UI_VERSION:=":v1.4"}
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: ${DB_UI_PORT:="31555"} # External port, if exposed
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# Databases Definitions:
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# 1. To add a new DB, copy the last 3 lines below and increment the id
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# 2. Add the new number in DB_CREATE_LIST
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: ${DB_NAME1:="meta"}
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: ${DB_USER1:="meta"}
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: ${DB_PASSWORD1:="metapwd"}
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: ${DB_NAME2:="features"}
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: ${DB_USER2:="features"}
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: ${DB_PASSWORD2:="featurespwd"}
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: ${DB_NAME3:="woken"}
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: ${DB_USER3:="woken"}
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: ${DB_PASSWORD3:="wokenpwd"}
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: ${DB_NAME4:="portal"}
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: ${DB_USER4:="portal"}
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: ${DB_PASSWORD4:="portalpwd"}
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# Database setup tools
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: ${DB_CREATE_IMAGE:="hbpmip/create-databases"}
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: ${DB_CREATE_VERSION:=":1.0.0"}
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# List of databases to create
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: ${DB_CREATE_LIST:="1 2 3 4"}
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: ${WOKEN_SETUP_IMAGE:="hbpmip/woken-db-setup"}
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: ${WOKEN_SETUP_VERSION:=":1.0.2"}
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: ${WOKEN_SETUP_DB:=${DB_NAME3}}
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#: ${METADATA_SETUP_IMAGE:="hbpmip/sample-meta-db-setup"}
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#: ${METADATA_SETUP_VERSION:=":0.4.0"}
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: ${METADATA_SETUP_IMAGE:="hbpmip/mip-cde-meta-db-setup"} # Stable Config
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: ${METADATA_SETUP_VERSION:=":1.1.1"} # Stable Config
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: ${METADATA_SETUP_DB:=${DB_NAME1}}
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: ${SAMPLE_SETUP_IMAGE:="hbpmip/sample-data-db-setup"}
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#: ${SAMPLE_SETUP_VERSION:=":0.5.0"}
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: ${SAMPLE_SETUP_VERSION:=":0.3.2"} # Stable Config
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: ${SAMPLE_SETUP_DB:=${DB_NAME2}}
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: ${ADNI_MERGE_SETUP_IMAGE:="registry.gitlab.com/hbpmip_private/adni-merge-db-setup"}
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: ${ADNI_MERGE_SETUP_VERSION:=":1.4.2"}
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: ${ADNI_MERGE_SETUP_DB:=${DB_NAME2}}
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: ${EDSD_SETUP_IMAGE:="registry.gitlab.com/hbpmip_private/edsd-data-db-setup"}
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: ${EDSD_SETUP_VERSION:=":1.3.2"}
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: ${EDSD_SETUP_DB:=${DB_NAME2}}
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: ${PPMI_SETUP_IMAGE:="registry.gitlab.com/hbpmip_private/ppmi-data-db-setup"}
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: ${PPMI_SETUP_VERSION:=":1.0.2"}
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: ${PPMI_SETUP_DB:=${DB_NAME2}}
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# List of databases to populate
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#: ${DB_SETUP_LIST:="WOKEN_SETUP METADATA_SETUP SAMPLE_SETUP"}
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: ${DB_SETUP_LIST:="WOKEN_SETUP METADATA_SETUP ADNI_MERGE_SETUP EDSD_SETUP PPMI_SETUP"} # Stable Config
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#############################################################################
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: ${MIP_PRIVATE_NETWORK:="mip_local"}
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: ${COMPOSE_PROJECT_NAME:="mip"}
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: ${PORTAINER_IMAGE:="portainer/portainer"}
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: ${PORTAINER_VERSION:=":latest"}
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: ${PORTAINER_HOST:="portainer"}
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: ${PORTAINER_PORT:="9000"}
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: ${PORTAINER_DATA:="${PWD}/portainer"}
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#############################################################################
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# Services
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: ${ZOOKEEPER_IMAGE:="zookeeper"}
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: ${ZOOKEEPER_VERSION:=":3.4.11"}
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: ${ZOOKEEPER_PORT1:="2181"}
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: ${ZOOKEEPER_PORT2:="2888"}
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: ${ZOOKEEPER_PORT3:="3888"}
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: ${MESOS_MASTER_IMAGE:="mesosphere/mesos-master"}
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: ${MESOS_MASTER_VERSION:=":1.3.0"}
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: ${MESOS_MASTER_PORT:="5050"}
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: ${MESOS_MASTER_LOGS:="${PWD}/mesos-master/logs"}
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: ${MESOS_MASTER_TMP:="${PWD}/mesos-master/tmp"}
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: ${MESOS_SLAVE_IMAGE:="mesosphere/mesos-slave"}
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: ${MESOS_SLAVE_VERSION:=":1.3.0"}
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: ${MESOS_SLAVE_PORT:="5051"}
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: ${MESOS_SLAVE_LOGS:="${PWD}/mesos-slave/logs"}
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: ${MESOS_SLAVE_TMP:="${PWD}/mesos-slave/tmp"}
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: ${CHRONOS_IMAGE:="mesosphere/chronos"}
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#: ${CHRONOS_VERSION:=":v3.0.2"}
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: ${CHRONOS_VERSION:=":chronos-2.5.0-0.1.20170628182950.ubuntu1404-mesos-1.3.0"} # Stable Config
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: ${CHRONOS_HOST:="chronos"}
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: ${CHRONOS_PORT1:="4400"}
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: ${CHRONOS_PORT2:="4401"}
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: ${WOKEN_IMAGE:="hbpmip/woken"}
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#: ${WOKEN_VERSION:=":2.1.4"}
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: ${WOKEN_VERSION:=":2.0.4"} # Stable Config
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: ${WOKEN_HOST:="woken"}
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: ${WOKEN_PORT1:="8088"}
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: ${WOKEN_PORT2:="8087"}
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: ${WOKEN_AKKA_PORT:=${WOKEN_PORT1}}
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: ${WOKEN_CONF:="${PWD}/woken/application.conf"}
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#: ${WOKEN_MAIN_TABLE:="cde_features_a"}
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: ${WOKEN_MAIN_TABLE:="mip_cde_features"} # Stable Config
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: ${WOKEN_EXAREME_URL:="http://prozac.madgik.di.uoa.gr:9090/mining/query"}
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#: ${WOKEN_CONTEXT_PATH:="/services"}
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: ${WOKEN_CONTEXT_PATH:=""} # Stable Config
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: ${WOKEN_VALIDATION_IMAGE:="hbpmip/woken-validation"}
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#: ${WOKEN_VALIDATION_VERSION:=":2.1.0"}
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: ${WOKEN_VALIDATION_VERSION:=":2.0.4"} # Stable Config
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: ${WOKEN_VALIDATION_HOST:="woken-validation"}
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: ${WOKEN_VALIDATION_PORT:="8082"}
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: ${WOKEN_VALIDATION_CONF:="${PWD}/woken/validation.conf"}
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: ${PORTAL_BACKEND_IMAGE:="hbpmip/portal-backend"}
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#: ${PORTAL_BACKEND_VERSION:=":2.5.4"}
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: ${PORTAL_BACKEND_VERSION:=":2.4.7"} # Stable Config
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: ${PORTAL_BACKEND_AUTHENTICATION:="0"}
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: ${PORTAL_BACKEND_CLIENT_ID:="none"}
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: ${PORTAL_BACKEND_CLIENT_SECRET:="none"}
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#: ${PORTAL_BACKEND_CONTEXT:="services"}
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: ${PORTAL_BACKEND_CONTEXT:=""} # Stable Config
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: ${PORTAL_FRONTEND_IMAGE:="hbpmip/portal-frontend"}
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#: ${PORTAL_FRONTEND_VERSION:=":2.6.0"}
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: ${PORTAL_FRONTEND_VERSION:=":2.3.3"} # Stable Config
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: ${PORTAL_FRONTEND_PORT1:="80"}
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: ${PORTAL_FRONTEND_PORT2:="443"}
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: ${PORTAL_FRONTEND_URL:="http://172.16.22.176:${PORTAL_FRONTEND_PORT1}"}
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