Initial Commit
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424
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424
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"checksum byteorder 1.3.2 (registry+https://github.com/rust-lang/crates.io-index)" = "a7c3dd8985a7111efc5c80b44e23ecdd8c007de8ade3b96595387e812b957cf5"
|
||||
"checksum cfg-if 0.1.9 (registry+https://github.com/rust-lang/crates.io-index)" = "b486ce3ccf7ffd79fdeb678eac06a9e6c09fc88d33836340becb8fffe87c5e33"
|
||||
"checksum chrono 0.4.9 (registry+https://github.com/rust-lang/crates.io-index)" = "e8493056968583b0193c1bb04d6f7684586f3726992d6c573261941a895dbd68"
|
||||
"checksum env_logger 0.6.2 (registry+https://github.com/rust-lang/crates.io-index)" = "aafcde04e90a5226a6443b7aabdb016ba2f8307c847d524724bd9b346dd1a2d3"
|
||||
"checksum humantime 1.3.0 (registry+https://github.com/rust-lang/crates.io-index)" = "df004cfca50ef23c36850aaaa59ad52cc70d0e90243c3c7737a4dd32dc7a3c4f"
|
||||
"checksum itoa 0.4.4 (registry+https://github.com/rust-lang/crates.io-index)" = "501266b7edd0174f8530248f87f99c88fbe60ca4ef3dd486835b8d8d53136f7f"
|
||||
"checksum lazy_static 1.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
|
||||
"checksum libc 0.2.62 (registry+https://github.com/rust-lang/crates.io-index)" = "34fcd2c08d2f832f376f4173a231990fa5aef4e99fb569867318a227ef4c06ba"
|
||||
"checksum log 0.4.8 (registry+https://github.com/rust-lang/crates.io-index)" = "14b6052be84e6b71ab17edffc2eeabf5c2c3ae1fdb464aae35ac50c67a44e1f7"
|
||||
"checksum measure_time 0.6.0 (registry+https://github.com/rust-lang/crates.io-index)" = "391eefb9cadd906954709b2291ee487eb233e67e32b9db8e27996cabce454b06"
|
||||
"checksum memchr 2.2.1 (registry+https://github.com/rust-lang/crates.io-index)" = "88579771288728879b57485cc7d6b07d648c9f0141eb955f8ab7f9d45394468e"
|
||||
"checksum memmap 0.7.0 (registry+https://github.com/rust-lang/crates.io-index)" = "6585fd95e7bb50d6cc31e20d4cf9afb4e2ba16c5846fc76793f11218da9c475b"
|
||||
"checksum num-integer 0.1.41 (registry+https://github.com/rust-lang/crates.io-index)" = "b85e541ef8255f6cf42bbfe4ef361305c6c135d10919ecc26126c4e5ae94bc09"
|
||||
"checksum num-traits 0.2.8 (registry+https://github.com/rust-lang/crates.io-index)" = "6ba9a427cfca2be13aa6f6403b0b7e7368fe982bfa16fccc450ce74c46cd9b32"
|
||||
"checksum pretty_env_logger 0.3.1 (registry+https://github.com/rust-lang/crates.io-index)" = "717ee476b1690853d222af4634056d830b5197ffd747726a9a1eee6da9f49074"
|
||||
"checksum proc-macro2 1.0.3 (registry+https://github.com/rust-lang/crates.io-index)" = "e98a83a9f9b331f54b924e68a66acb1bb35cb01fb0a23645139967abefb697e8"
|
||||
"checksum quick-error 1.2.2 (registry+https://github.com/rust-lang/crates.io-index)" = "9274b940887ce9addde99c4eee6b5c44cc494b182b97e73dc8ffdcb3397fd3f0"
|
||||
"checksum quote 1.0.2 (registry+https://github.com/rust-lang/crates.io-index)" = "053a8c8bcc71fcce321828dc897a98ab9760bef03a4fc36693c231e5b3216cfe"
|
||||
"checksum redox_syscall 0.1.56 (registry+https://github.com/rust-lang/crates.io-index)" = "2439c63f3f6139d1b57529d16bc3b8bb855230c8efcc5d3a896c8bea7c3b1e84"
|
||||
"checksum regex 1.3.1 (registry+https://github.com/rust-lang/crates.io-index)" = "dc220bd33bdce8f093101afe22a037b8eb0e5af33592e6a9caafff0d4cb81cbd"
|
||||
"checksum regex-syntax 0.6.12 (registry+https://github.com/rust-lang/crates.io-index)" = "11a7e20d1cce64ef2fed88b66d347f88bd9babb82845b2b858f3edbf59a4f716"
|
||||
"checksum ryu 1.0.0 (registry+https://github.com/rust-lang/crates.io-index)" = "c92464b447c0ee8c4fb3824ecc8383b81717b9f1e74ba2e72540aef7b9f82997"
|
||||
"checksum serde 1.0.100 (registry+https://github.com/rust-lang/crates.io-index)" = "f4473e8506b213730ff2061073b48fa51dcc66349219e2e7c5608f0296a1d95a"
|
||||
"checksum serde_derive 1.0.100 (registry+https://github.com/rust-lang/crates.io-index)" = "11e410fde43e157d789fc290d26bc940778ad0fdd47836426fbac36573710dbb"
|
||||
"checksum serde_json 1.0.40 (registry+https://github.com/rust-lang/crates.io-index)" = "051c49229f282f7c6f3813f8286cc1e3323e8051823fce42c7ea80fe13521704"
|
||||
"checksum syn 1.0.5 (registry+https://github.com/rust-lang/crates.io-index)" = "66850e97125af79138385e9b88339cbcd037e3f28ceab8c5ad98e64f0f1f80bf"
|
||||
"checksum termcolor 1.0.5 (registry+https://github.com/rust-lang/crates.io-index)" = "96d6098003bde162e4277c70665bd87c326f5a0c3f3fbfb285787fa482d54e6e"
|
||||
"checksum thread_local 0.3.6 (registry+https://github.com/rust-lang/crates.io-index)" = "c6b53e329000edc2b34dbe8545fd20e55a333362d0a321909685a19bd28c3f1b"
|
||||
"checksum time 0.1.42 (registry+https://github.com/rust-lang/crates.io-index)" = "db8dcfca086c1143c9270ac42a2bbd8a7ee477b78ac8e45b19abfb0cbede4b6f"
|
||||
"checksum unicode-xid 0.2.0 (registry+https://github.com/rust-lang/crates.io-index)" = "826e7639553986605ec5979c7dd957c7895e93eabed50ab2ffa7f6128a75097c"
|
||||
"checksum winapi 0.3.8 (registry+https://github.com/rust-lang/crates.io-index)" = "8093091eeb260906a183e6ae1abdba2ef5ef2257a21801128899c3fc699229c6"
|
||||
"checksum winapi-i686-pc-windows-gnu 0.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
|
||||
"checksum winapi-util 0.1.2 (registry+https://github.com/rust-lang/crates.io-index)" = "7168bab6e1daee33b4557efd0e95d5ca70a03706d39fa5f3fe7a236f584b03c9"
|
||||
"checksum winapi-x86_64-pc-windows-gnu 0.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
|
||||
"checksum wincolor 1.0.2 (registry+https://github.com/rust-lang/crates.io-index)" = "96f5016b18804d24db43cebf3c77269e7569b8954a8464501c216cc5e070eaa9"
|
||||
42
Cargo.toml
Normal file
42
Cargo.toml
Normal file
@@ -0,0 +1,42 @@
|
||||
[package]
|
||||
name = "mercator_indexer"
|
||||
version = "0.1.0"
|
||||
authors = ["EPFL-DIAS", "Lionel Sambuc <lionel.sambuc@epfl.ch>"]
|
||||
|
||||
edition = "2018"
|
||||
|
||||
description = "Generate test data for Mercator"
|
||||
#homepage = "https://crates.io/crates/mercator_data_generator"
|
||||
repository = "https://github.com/epfl-dias/mercator_data_generator"
|
||||
readme = "README.md"
|
||||
|
||||
keywords = []
|
||||
categories = [ ]
|
||||
|
||||
license = "MIT"
|
||||
#license-file = "LICENSE"
|
||||
|
||||
include = ["Cargo.toml", "README.md", "LICENSE", "ACKNOWLEDGEMENTS", "src/**/*.rs"]
|
||||
|
||||
[dependencies]
|
||||
#serde = "^1.0"
|
||||
#serde_json = "^1.0"
|
||||
#rand = "^0.7"
|
||||
measure_time = "^0.6"
|
||||
mercator_db = "^0.1"
|
||||
|
||||
# Logging macros API
|
||||
log = { version = "^0.4", features = ["max_level_trace", "release_max_level_info"] }
|
||||
pretty_env_logger = "^0.3" # Logger implementation
|
||||
|
||||
[workspace]
|
||||
|
||||
[patch.crates-io]
|
||||
mercator_db = { path = "../mercator_db" }
|
||||
ironsea_index = { path = "../ironsea_index" }
|
||||
ironsea_store = { path = "../ironsea_store" }
|
||||
ironsea_table = { path = "../ironsea_table" }
|
||||
|
||||
ironsea_index_hashmap = { path = "../ironsea_index_hashmap" }
|
||||
ironsea_index_sfc_dbc = { path = "../ironsea_index_sfc_dbc" }
|
||||
ironsea_table_vector = { path = "../ironsea_table_vector" }
|
||||
72
README.md
Normal file
72
README.md
Normal file
@@ -0,0 +1,72 @@
|
||||
# Mercator Indexer
|
||||
|
||||
Small tool to generate indexes for the Mercator Spatial Index service.
|
||||
|
||||
## Mercator: Spatial Index
|
||||
|
||||
**Mercator** is a spatial *volumetric* index for the [Human Brain Project](http://www.humanbrainproject.eu). It is a component of the [Knowledge Graph](http://www.humanbrainproject.eu/en/explore-the-brain/search/) service, which provides the spatial anchoring for the metadata registered as well as processes the volumetric queries.
|
||||
|
||||
It is build on top of the Iron Sea database toolkit.
|
||||
|
||||
## Iron Sea: Database Toolkit
|
||||
|
||||
**Iron Sea** provides a set of database engine bricks, which can be combined and applied on arbitrary data structures.
|
||||
|
||||
Unlike a traditional database, it does not assume a specific physical structure for the tables nor the records, but relies on the developper to provide a set of extractor functions which are used by the specific indices provided.
|
||||
|
||||
This enables the index implementations to be agnostic from the underlying data structure, and re-used.
|
||||
|
||||
## Requirements
|
||||
|
||||
### Software
|
||||
|
||||
* Rust: https://www.rust-lang.org
|
||||
|
||||
## Quick start
|
||||
|
||||
Checkout the dependencies in the parent folder:
|
||||
* mercator_db
|
||||
* ironsea_index
|
||||
* ironsea_store
|
||||
* ironsea_table
|
||||
* ironsea_index_hashmap
|
||||
* ironsea_index_sfc_dbc
|
||||
* ironsea_table_vector
|
||||
|
||||
For 3 datasets, `setA`, `setB`, `setC`, the following files are expected to be in the current folder:
|
||||
* setA:
|
||||
- setA.objects.json
|
||||
- setA.spaces.json
|
||||
* setB:
|
||||
- setB.objects.json
|
||||
- setB.spaces.json
|
||||
* setC:
|
||||
- setC.objects.json
|
||||
- setC.spaces.json
|
||||
|
||||
Run (and build if necessary) the indexer:
|
||||
|
||||
```sh
|
||||
MERCATOR_DATASETS="setA, setB, setC" cargo run --release
|
||||
```
|
||||
|
||||
This will produce the following files:
|
||||
* setA
|
||||
- setA.objects.bin
|
||||
- setA.spaces.bin
|
||||
- setA.index
|
||||
* setB
|
||||
- setB.objects.bin
|
||||
- setB.spaces.bin
|
||||
- setB.index
|
||||
* setC
|
||||
- setC.objects.bin
|
||||
- setC.spaces.bin
|
||||
- setC.index
|
||||
|
||||
## Acknowledgements
|
||||
|
||||
This open source software code was developed in part or in whole in the
|
||||
Human Brain Project, funded from the European Union’s Horizon 2020
|
||||
Framework Programme for Research and Innovation under the Specific Grant
|
||||
Agreement No. 785907 (Human Brain Project SGA2).
|
||||
51
src/main.rs
Normal file
51
src/main.rs
Normal file
@@ -0,0 +1,51 @@
|
||||
#[macro_use]
|
||||
extern crate measure_time;
|
||||
|
||||
use std::process::exit;
|
||||
|
||||
use mercator_db::json::storage;
|
||||
|
||||
fn main() {
|
||||
// If RUST_LOG is unset, set it to INFO, otherwise keep it as-is.
|
||||
if std::env::var("RUST_LOG").is_err() {
|
||||
std::env::set_var("RUST_LOG", "info");
|
||||
}
|
||||
pretty_env_logger::init();
|
||||
|
||||
let datasets;
|
||||
|
||||
if std::env::var("MERCATOR_DATASETS").is_err() {
|
||||
std::env::set_var("MERCATOR_DATASETS", "test");
|
||||
}
|
||||
|
||||
match std::env::var("MERCATOR_DATASETS") {
|
||||
Ok(val) => {
|
||||
datasets = val
|
||||
.split(',')
|
||||
.map(|s| s.trim().to_string())
|
||||
.collect::<Vec<_>>()
|
||||
}
|
||||
Err(val) => {
|
||||
error!("Could not fetch {} : `{}`", "MERCATOR_DATASETS", val);
|
||||
exit(1);
|
||||
}
|
||||
};
|
||||
|
||||
for dataset in datasets {
|
||||
println!();
|
||||
warn!("Indexing dataset: {}", dataset);
|
||||
warn_time!("Indexed dataset: {}", dataset);
|
||||
|
||||
// Convert to binary the JSON data:
|
||||
{
|
||||
info_time!("Converting to binary JSON data");
|
||||
storage::convert(&dataset);
|
||||
}
|
||||
|
||||
// Build a Database Index:
|
||||
{
|
||||
info_time!("Building database index");
|
||||
storage::build(&dataset);
|
||||
}
|
||||
}
|
||||
}
|
||||
Reference in New Issue
Block a user